Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1439

Experiment: Xylan from corn core; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core; autoclaved 2.5 mg/ml (C)
1,768,436	+		BT1438	0.37	-0.5
1,768,806	+		BT1438	0.63	-1.6
1,768,807	-		BT1438	0.63	-1.0
1,768,843	+		BT1438	0.65	-1.0
1,768,930	+		BT1438	0.71	-1.6
1,768,982	-		BT1438	0.75	-1.6
1,768,982	-		BT1438	0.75	-1.0
1,769,079	+		BT1438	0.82	-1.0
1,769,121	-		BT1438	0.85	-2.2
1,769,149	-		BT1438	0.87	-0.0
1,769,222	-				-1.0
1,769,255	-				-1.3
1,769,270	-				-2.0
1,769,366	-				+1.0
1,769,366	-				-0.6
1,769,423	-				-0.6
1,769,435	-				-1.2
1,769,458	-				-0.5
1,769,458	-				-0.7
1,769,458	-				-1.6
1,769,464	-				+0.7
1,769,585	-		BT1439	0.12	-0.6
1,769,624	-		BT1439	0.14	-1.0
1,769,630	+		BT1439	0.15	-0.0
1,769,631	-		BT1439	0.15	-0.2
1,769,631	-		BT1439	0.15	-0.5
1,769,640	-		BT1439	0.15	-0.9
1,769,728	-		BT1439	0.21	-0.0
1,769,732	-		BT1439	0.21	-0.4
1,769,735	+		BT1439	0.22	-1.5
1,769,735	+		BT1439	0.22	-1.0
1,769,864	-		BT1439	0.30	-1.0
1,769,893	-		BT1439	0.32	-2.3
1,769,902	-		BT1439	0.33	-1.7
1,769,902	-		BT1439	0.33	-2.0
1,769,956	+		BT1439	0.37	+0.6
1,769,987	-		BT1439	0.39	+1.0
1,769,991	+		BT1439	0.39	-1.3
1,769,992	-		BT1439	0.39	-0.6
1,769,992	-		BT1439	0.39	-0.3
1,769,992	-		BT1439	0.39	-0.0
1,770,004	-		BT1439	0.40	-0.7
1,770,018	+		BT1439	0.41	+0.2
1,770,082	+		BT1439	0.45	-1.6
1,770,122	-		BT1439	0.48	-0.7
1,770,192	-		BT1439	0.52	-0.6
1,770,196	-		BT1439	0.53	-0.6
1,770,196	-		BT1439	0.53	+0.3
1,770,231	+		BT1439	0.55	-1.0
1,770,280	-		BT1439	0.58	+1.3
1,770,319	-		BT1439	0.61	-1.0
1,770,319	-		BT1439	0.61	-0.0
1,770,365	-		BT1439	0.64	-0.6
1,770,376	+		BT1439	0.65	-0.5
1,770,378	+		BT1439	0.65	-0.9
1,770,378	+		BT1439	0.65	-2.0
1,770,379	-		BT1439	0.65	+0.4
1,770,379	-		BT1439	0.65	+0.0
1,770,380	+		BT1439	0.65	-0.6
1,770,381	-		BT1439	0.65	-1.0
1,770,383	-		BT1439	0.65	-2.6
1,770,383	-		BT1439	0.65	-0.2
1,770,383	-		BT1439	0.65	-2.0
1,770,383	-		BT1439	0.65	-0.3
1,770,383	-		BT1439	0.65	-0.0
1,770,404	-		BT1439	0.67	-0.1
1,770,404	-		BT1439	0.67	+0.3
1,770,427	-		BT1439	0.68	-1.0
1,770,435	-		BT1439	0.69	-0.0
1,770,535	+		BT1439	0.76	+0.3
1,770,536	-		BT1439	0.76	-0.8
1,770,550	-		BT1439	0.77	+1.0
1,770,665	-		BT1439	0.84	-1.0
1,770,665	-		BT1439	0.84	+0.4
1,770,665	-		BT1439	0.84	-1.7
1,770,705	+		BT1439	0.87	-0.0
1,770,706	-		BT1439	0.87	+1.1
1,770,733	-		BT1439	0.89	-1.0
1,770,791	+				-1.3
1,770,824	-				-0.0
1,770,866	-				-1.6
1,770,870	-				-1.0
1,770,872	-				-0.0
1,770,896	-				-0.7
1,770,897	+				-3.0
1,770,897	+				-0.0
1,771,097	-				-0.3
1,771,097	-				-2.0
1,771,102	-				-0.8
1,771,125	-				-1.0
1,771,125	-				-1.3
1,771,127	-				-0.2
1,771,203	-				-1.0
1,771,287	-		BT1440	0.12	-0.6
1,771,290	-		BT1440	0.12	-0.0
1,771,300	+		BT1440	0.12	-0.4
1,771,304	+		BT1440	0.13	+1.0
1,771,307	-		BT1440	0.13	+0.6
1,771,368	-		BT1440	0.15	-0.8
1,771,432	+		BT1440	0.17	-1.6
1,771,433	-		BT1440	0.17	-0.0
1,771,433	-		BT1440	0.17	-0.0
1,771,491	-		BT1440	0.19	+0.2
1,771,544	-		BT1440	0.20	+0.5
1,771,544	-		BT1440	0.20	-0.6
1,771,553	-		BT1440	0.21	-0.6
1,771,626	-		BT1440	0.23	-1.0
1,771,709	+		BT1440	0.26	-1.6
1,771,710	-		BT1440	0.26	-1.0
1,771,789	-		BT1440	0.28	-0.3
1,771,789	-		BT1440	0.28	+2.0