Experiment: Xylan from corn core; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0337 and BT0338 are separated by 769 nucleotides BT0338 and BT0339 are separated by 121 nucleotides
BT0337: BT0337 - conserved hypothetical protein (NCBI ptt file), at 401,991 to 402,473
BT0337
BT0338: BT0338 - conserved hypothetical protein (NCBI ptt file), at 403,243 to 405,093
BT0338
BT0339: BT0339 - alpha-glucosidase (NCBI ptt file), at 405,215 to 407,461
BT0339
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 402.366 kb on - strand, within BT0337 at 402.641 kb on - strand at 402.732 kb on + strand at 402.748 kb on + strand at 402.827 kb on - strand at 402.956 kb on - strand at 402.956 kb on - strand at 402.959 kb on + strand at 402.960 kb on - strand at 402.991 kb on - strand at 403.097 kb on - strand at 403.125 kb on - strand at 403.223 kb on + strand at 403.224 kb on - strand at 403.375 kb on - strand at 403.793 kb on + strand, within BT0338 at 404.084 kb on - strand, within BT0338 at 404.084 kb on - strand, within BT0338 at 404.086 kb on + strand, within BT0338 at 404.087 kb on - strand, within BT0338 at 404.087 kb on - strand, within BT0338 at 404.090 kb on - strand, within BT0338 at 404.221 kb on - strand, within BT0338 at 404.292 kb on + strand, within BT0338 at 404.370 kb on - strand, within BT0338 at 404.375 kb on + strand, within BT0338 at 404.503 kb on - strand, within BT0338 at 404.582 kb on + strand, within BT0338 at 404.595 kb on + strand, within BT0338 at 404.665 kb on + strand, within BT0338 at 404.834 kb on - strand, within BT0338 at 404.835 kb on + strand, within BT0338 at 404.927 kb on - strand at 405.096 kb on - strand at 405.180 kb on + strand at 405.202 kb on + strand at 405.205 kb on + strand at 405.268 kb on - strand at 405.298 kb on + strand at 405.299 kb on - strand at 405.332 kb on - strand at 405.332 kb on - strand at 405.366 kb on + strand at 405.376 kb on + strand at 405.376 kb on + strand at 405.376 kb on + strand at 405.376 kb on + strand at 405.377 kb on - strand at 405.412 kb on + strand at 405.433 kb on + strand at 405.677 kb on + strand, within BT0339 at 405.906 kb on + strand, within BT0339 at 405.934 kb on - strand, within BT0339 at 405.971 kb on + strand, within BT0339
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core; autoclaved 2.5 mg/ml (C) remove 402,366 - BT0337 0.78 -1.6 402,641 - -0.0 402,732 + -2.6 402,748 + -0.8 402,827 - -0.8 402,956 - -0.6 402,956 - -1.5 402,959 + -1.0 402,960 - -2.2 402,991 - -0.0 403,097 - -1.4 403,125 - -0.0 403,223 + -0.5 403,224 - +1.0 403,375 - -1.5 403,793 + BT0338 0.30 +0.5 404,084 - BT0338 0.45 +0.3 404,084 - BT0338 0.45 -0.6 404,086 + BT0338 0.46 -0.8 404,087 - BT0338 0.46 -0.2 404,087 - BT0338 0.46 -0.0 404,090 - BT0338 0.46 -1.0 404,221 - BT0338 0.53 -0.0 404,292 + BT0338 0.57 -0.4 404,370 - BT0338 0.61 +0.2 404,375 + BT0338 0.61 -0.5 404,503 - BT0338 0.68 -0.5 404,582 + BT0338 0.72 -0.8 404,595 + BT0338 0.73 -1.4 404,665 + BT0338 0.77 +0.7 404,834 - BT0338 0.86 +0.5 404,835 + BT0338 0.86 -1.8 404,927 - -3.7 405,096 - -0.6 405,180 + -1.0 405,202 + -1.0 405,205 + -2.0 405,268 - -0.6 405,298 + +1.0 405,299 - -1.0 405,332 - -1.2 405,332 - -1.0 405,366 + -0.0 405,376 + -1.0 405,376 + -0.0 405,376 + +0.7 405,376 + +1.0 405,377 - -0.0 405,412 + -0.6 405,433 + -0.0 405,677 + BT0339 0.21 -1.3 405,906 + BT0339 0.31 -0.0 405,934 - BT0339 0.32 -0.6 405,971 + BT0339 0.34 +0.3
Or see this region's nucleotide sequence