Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT_t17

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
1,144,430	+				-1.0
1,144,431	-				-1.6
1,144,460	+				-1.6
1,144,463	+				-0.2
1,144,464	-				-1.6
1,144,465	+				-0.0
1,144,494	+				+0.3
1,144,497	-				-1.4
1,144,542	-				-0.6
1,144,544	+				-0.8
1,144,588	+				+0.4
1,144,605	-				-1.6
1,144,717	-	pseudo-tRNA	BT_t17	0.44	-2.0
1,144,730	-	pseudo-tRNA	BT_t17	0.61	-2.8
1,144,730	-	pseudo-tRNA	BT_t17	0.61	-1.6
1,144,783	-				+0.3
1,144,798	-				-1.0
1,144,807	+				-1.3
1,144,826	-				+0.5
1,144,888	-				-0.0
1,144,940	-		BT0930	0.33	-0.6
1,144,944	-		BT0930	0.35	-0.6
1,144,946	-		BT0930	0.36	-0.0
1,144,969	-		BT0930	0.47	-0.7
1,144,969	-		BT0930	0.47	-1.6
1,144,990	-		BT0930	0.58	-2.0
1,144,992	-		BT0930	0.59	+0.5
1,145,047	-		BT0930	0.86	-2.7
1,145,088	-				-0.6
1,145,102	-				+0.5
1,145,103	+				-1.0
1,145,127	+				-0.6
1,145,166	-				+1.0
1,145,220	-		BT0931	0.14	-1.0
1,145,222	-		BT0931	0.14	+0.5
1,145,229	-		BT0931	0.15	-0.7
1,145,284	-		BT0931	0.24	-0.4
1,145,306	-		BT0931	0.27	-1.0
1,145,316	-		BT0931	0.29	+1.0
1,145,351	+		BT0931	0.34	-0.0
1,145,390	+		BT0931	0.40	-0.7
1,145,424	+		BT0931	0.46	-1.0
1,145,506	+		BT0931	0.58	-0.0
1,145,510	+		BT0931	0.59	+1.0
1,145,511	-		BT0931	0.59	+0.5
1,145,543	-		BT0931	0.64	-1.5
1,145,583	-		BT0931	0.70	-1.6
1,145,648	+		BT0931	0.80	-0.0
1,145,649	-		BT0931	0.80	-0.0
1,145,670	-		BT0931	0.84	-0.0
1,145,670	-		BT0931	0.84	-1.6