Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3704

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
4,812,015	+	SusB	BT3703	0.65	-1.6
4,812,015	+	SusB	BT3703	0.65	-1.9
4,812,042	+	SusB	BT3703	0.66	-1.2
4,812,042	+	SusB	BT3703	0.66	-4.2
4,812,083	+	SusB	BT3703	0.68	+0.0
4,812,083	+	SusB	BT3703	0.68	-2.3
4,812,084	-	SusB	BT3703	0.68	+0.0
4,812,121	+	SusB	BT3703	0.69	-2.5
4,812,121	+	SusB	BT3703	0.69	+0.0
4,812,212	+	SusB	BT3703	0.73	-1.0
4,812,213	-	SusB	BT3703	0.73	-1.0
4,812,233	+	SusB	BT3703	0.74	-1.6
4,812,233	+	SusB	BT3703	0.74	-1.0
4,812,234	-				-2.3
4,812,385	-	SusB	BT3703	0.81	-2.3
4,812,431	+	SusB	BT3703	0.83	-3.2
4,812,592	-				-1.6
4,812,652	-				-2.6
4,812,703	+				-3.0
4,812,805	-				-2.7
4,812,901	-				+1.0
4,812,954	-				-0.6
4,812,954	-				-1.6
4,812,974	+				-1.0
4,812,996	+				-1.1
4,813,074	-				-2.2
4,813,172	-				-1.6
4,813,431	+	SusA	BT3704	0.23	-1.0
4,813,434	-	SusA	BT3704	0.24	-2.3
4,813,460	+	SusA	BT3704	0.25	-2.3
4,813,461	-	SusA	BT3704	0.25	-4.5
4,813,502	-	SusA	BT3704	0.27	+1.0
4,813,502	-	SusA	BT3704	0.27	-1.6
4,813,593	-	SusA	BT3704	0.32	-1.0
4,813,778	+	SusA	BT3704	0.42	-1.6
4,813,779	-	SusA	BT3704	0.42	-3.7
4,813,834	+	SusA	BT3704	0.45	-1.6
4,813,835	-	SusA	BT3704	0.45	-2.6
4,813,835	-	SusA	BT3704	0.45	-1.0
4,813,921	-	SusA	BT3704	0.50	-1.0
4,814,056	-	SusA	BT3704	0.57	-5.1
4,814,107	-	SusA	BT3704	0.60	-2.8
4,814,107	-	SusA	BT3704	0.60	+0.0
4,814,179	+	SusA	BT3704	0.64	-2.6
4,814,250	-	SusA	BT3704	0.68	-2.6
4,814,297	+	SusA	BT3704	0.70	-1.0
4,814,298	-	SusA	BT3704	0.70	-4.0
4,814,298	-	SusA	BT3704	0.70	-2.8
4,814,299	+	SusA	BT3704	0.70	+0.0
4,814,321	+	SusA	BT3704	0.71	-1.0
4,814,321	+	SusA	BT3704	0.71	-2.0
4,814,322	-	SusA	BT3704	0.71	-1.0
4,814,322	-	SusA	BT3704	0.71	-2.0
4,814,326	-	SusA	BT3704	0.72	-3.7
4,814,461	+	SusA	BT3704	0.79	-2.6
4,814,611	-	SusA	BT3704	0.87	-1.0
4,814,697	-				-3.9
4,814,712	-				+0.0
4,814,714	+				-2.8
4,814,718	-				-0.8
4,814,771	-				-1.0
4,814,793	-				-2.8
4,815,054	-				-2.7
4,815,054	-				+0.0
4,815,066	-				+0.0
4,815,106	-				-3.2
4,815,110	+				-0.6
4,815,111	-				-2.3
4,815,164	-	SusR	BT3705	0.13	+0.0
4,815,205	+	SusR	BT3705	0.15	-2.0
4,815,205	+	SusR	BT3705	0.15	-1.6
4,815,207	+	SusR	BT3705	0.15	+0.0
4,815,207	+	SusR	BT3705	0.15	-2.6
4,815,208	-	SusR	BT3705	0.15	+0.0
4,815,208	-	SusR	BT3705	0.15	-0.6
4,815,208	-	SusR	BT3705	0.15	-1.6
4,815,208	-	SusR	BT3705	0.15	+0.0
4,815,231	+	SusR	BT3705	0.16	-4.9
4,815,250	+	SusR	BT3705	0.17	-3.5
4,815,308	+	SusR	BT3705	0.21	+0.0
4,815,308	+	SusR	BT3705	0.21	-3.4
4,815,308	+	SusR	BT3705	0.21	+0.0
4,815,309	-	SusR	BT3705	0.21	-2.0
4,815,362	+	SusR	BT3705	0.24	-1.3
4,815,365	-	SusR	BT3705	0.24	-2.2
4,815,384	+	SusR	BT3705	0.25	-1.7
4,815,397	-	SusR	BT3705	0.26	-5.0
4,815,417	-	SusR	BT3705	0.27	+0.0
4,815,417	-	SusR	BT3705	0.27	-1.0
4,815,454	-	SusR	BT3705	0.29	-3.8
4,815,465	-	SusR	BT3705	0.30	-4.2
4,815,465	-	SusR	BT3705	0.30	-3.0
4,815,476	-	SusR	BT3705	0.30	-3.6
4,815,534	-	SusR	BT3705	0.34	-2.6
4,815,679	+	SusR	BT3705	0.42	-2.0
4,815,695	-	SusR	BT3705	0.43	-1.0
4,815,695	-	SusR	BT3705	0.43	-2.6
4,815,775	-	SusR	BT3705	0.47	-2.9
4,815,775	-	SusR	BT3705	0.47	+0.0
4,815,779	-	SusR	BT3705	0.48	-2.3
4,815,782	+	SusR	BT3705	0.48	-2.3
4,815,783	-	SusR	BT3705	0.48	-1.0
4,815,783	-	SusR	BT3705	0.48	-1.3
4,815,783	-	SusR	BT3705	0.48	-0.6
4,815,804	-	SusR	BT3705	0.49	-4.0
4,815,805	+	SusR	BT3705	0.49	-1.9