Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2375

Experiment: Dextrin from potato starch; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
2,961,130	+		BT2374	0.50	-1.0
2,961,133	+		BT2374	0.50	-1.0
2,961,133	+		BT2374	0.50	-1.0
2,961,134	-		BT2374	0.50	-0.6
2,961,142	+		BT2374	0.50	-0.0
2,961,188	-		BT2374	0.53	-1.0
2,961,188	-		BT2374	0.53	-1.6
2,961,188	-		BT2374	0.53	-2.0
2,961,421	+		BT2374	0.65	-0.6
2,961,421	+		BT2374	0.65	+0.4
2,961,421	+		BT2374	0.65	+0.6
2,961,422	-		BT2374	0.65	-2.5
2,961,422	-		BT2374	0.65	+1.3
2,961,440	-		BT2374	0.66	-0.0
2,961,530	+		BT2374	0.70	-0.0
2,961,533	+		BT2374	0.70	-1.4
2,961,537	+		BT2374	0.71	-2.3
2,961,545	-		BT2374	0.71	-0.0
2,961,548	+		BT2374	0.71	-0.7
2,961,548	+		BT2374	0.71	+0.6
2,961,585	+		BT2374	0.73	-0.6
2,961,601	+		BT2374	0.74	+0.7
2,961,688	+		BT2374	0.78	-0.6
2,961,688	+		BT2374	0.78	-0.0
2,961,745	+		BT2374	0.81	-0.0
2,961,765	+		BT2374	0.82	+0.4
2,961,765	+		BT2374	0.82	+0.2
2,961,765	+		BT2374	0.82	-0.0
2,961,843	+		BT2374	0.86	-0.8
2,961,843	+		BT2374	0.86	-0.0
2,961,861	+		BT2374	0.87	-1.6
2,961,868	-		BT2374	0.88	-1.3
2,961,914	+		BT2374	0.90	-0.6
2,961,914	+		BT2374	0.90	-2.0
2,961,926	+				+0.6
2,961,963	-				-1.7
2,961,970	+				-0.2
2,961,970	+				-1.7
2,961,974	-				+0.4
2,962,032	+				-1.6
2,962,091	+				-0.8
2,962,097	+				-1.0
2,962,147	+		BT2375	0.19	-1.0
2,962,171	+		BT2375	0.32	-2.3
2,962,171	+		BT2375	0.32	-1.6
2,962,191	-		BT2375	0.42	-0.0
2,962,234	-		BT2375	0.65	-2.8
2,962,272	-		BT2375	0.84	-1.0
2,962,293	-				-0.5
2,962,364	+				-3.3
2,962,500	+				-1.0
2,962,514	+				-1.0
2,962,529	+				-0.3
2,962,536	+				-0.3
2,962,542	+				-0.4
2,962,543	-				+0.4
2,962,631	-				-2.7
2,962,647	-				+0.1
2,962,648	+				-0.7
2,962,680	-		BT2376	0.14	-2.6
2,962,692	+		BT2376	0.16	-2.8
2,962,694	+		BT2376	0.17	-0.0
2,962,699	+		BT2376	0.18	-0.8
2,962,779	-		BT2376	0.33	-1.6
2,962,779	-		BT2376	0.33	-0.0
2,962,786	-		BT2376	0.34	+0.6
2,962,833	+		BT2376	0.43	-0.0
2,962,833	+		BT2376	0.43	-0.7
2,962,834	-		BT2376	0.43	-0.8
2,962,834	-		BT2376	0.43	-0.8
2,962,871	+		BT2376	0.50	-1.8
2,962,872	-		BT2376	0.50	+1.0
2,962,872	-		BT2376	0.50	-1.0
2,962,877	+		BT2376	0.51	-0.3
2,962,878	-		BT2376	0.51	-1.6
2,962,908	+		BT2376	0.57	-0.7
2,962,936	+		BT2376	0.62	-2.0
2,962,936	+		BT2376	0.62	-1.1
2,962,936	+		BT2376	0.62	-0.7
2,963,004	+		BT2376	0.74	-2.0
2,963,015	+		BT2376	0.77	-0.6
2,963,015	+		BT2376	0.77	-1.0
2,963,015	+		BT2376	0.77	-0.4
2,963,015	+		BT2376	0.77	-1.0
2,963,016	-		BT2376	0.77	-1.6
2,963,026	+		BT2376	0.79	-1.6
2,963,027	-		BT2376	0.79	+0.3
2,963,080	-		BT2376	0.89	-0.0
2,963,139	-				-0.5
2,963,190	-				+1.4
2,963,223	-				-2.0
2,963,223	-				+0.6
2,963,278	-				+1.6