Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4704

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
6,173,053	-		BT4703	0.20	-2.0
6,173,184	+		BT4703	0.33	-0.6
6,173,211	+		BT4703	0.35	-0.0
6,173,385	-		BT4703	0.52	-1.2
6,173,465	+		BT4703	0.60	-1.0
6,173,521	-		BT4703	0.65	-1.0
6,173,565	-		BT4703	0.70	-1.6
6,173,570	-		BT4703	0.70	-0.0
6,173,571	+		BT4703	0.70	-1.6
6,173,574	+		BT4703	0.71	-0.0
6,173,575	-		BT4703	0.71	-0.3
6,173,626	-		BT4703	0.76	-0.4
6,173,628	+		BT4703	0.76	-0.0
6,173,711	+		BT4703	0.84	-1.6
6,173,807	+				-0.0
6,173,820	+				-0.0
6,173,825	+				-1.0
6,173,922	+				-0.6
6,174,068	+		BT4704	0.18	+0.6
6,174,158	-		BT4704	0.26	-2.8
6,174,178	-		BT4704	0.28	+1.3
6,174,233	-		BT4704	0.33	-0.0
6,174,235	+		BT4704	0.33	+1.3
6,174,236	-		BT4704	0.33	+1.6
6,174,313	-		BT4704	0.40	-0.8
6,174,313	-		BT4704	0.40	+1.0
6,174,317	+		BT4704	0.40	+0.6
6,174,318	-		BT4704	0.40	-0.0
6,174,318	-		BT4704	0.40	-0.0
6,174,371	+		BT4704	0.45	-0.6
6,174,513	+		BT4704	0.58	+0.4
6,174,517	-		BT4704	0.58	-0.0
6,174,569	+		BT4704	0.63	-1.2
6,174,570	-		BT4704	0.63	-2.2
6,174,612	-		BT4704	0.67	+1.0
6,174,674	+		BT4704	0.73	-1.6
6,174,675	-		BT4704	0.73	-0.0
6,174,687	-		BT4704	0.74	-1.6
6,174,815	-		BT4704	0.85	-0.4
6,174,831	-		BT4704	0.87	-1.0
6,174,855	+		BT4704	0.89	-0.8
6,174,856	-		BT4704	0.89	-1.0
6,174,859	-		BT4704	0.89	-1.0
6,174,873	-				-0.0
6,174,873	-				-2.8
6,174,917	+				-1.8
6,174,940	+				-0.4
6,174,952	+				-1.6
6,175,040	-		BT4705	0.16	+0.8
6,175,040	-		BT4705	0.16	-0.9
6,175,047	-		BT4705	0.17	-1.4
6,175,119	-		BT4705	0.29	-0.5
6,175,148	+		BT4705	0.35	-1.2
6,175,177	-		BT4705	0.40	-1.9
6,175,191	-		BT4705	0.42	-1.6
6,175,194	+		BT4705	0.43	-1.2
6,175,194	+		BT4705	0.43	-1.6
6,175,195	-		BT4705	0.43	-1.4
6,175,195	-		BT4705	0.43	-1.0
6,175,250	-		BT4705	0.52	-1.0
6,175,311	+		BT4705	0.63	+1.0
6,175,312	-		BT4705	0.63	-0.9
6,175,312	-		BT4705	0.63	-0.6
6,175,384	-		BT4705	0.76	-1.0
6,175,384	-		BT4705	0.76	-1.4
6,175,559	-				-1.0
6,175,565	+				-2.0
6,175,636	-				-0.0
6,175,667	+				-1.6
6,175,701	+				-2.3
6,175,727	-				+0.2
6,175,791	+				-1.8
6,175,819	+				-0.0
6,175,828	-				-0.8
6,175,882	+		BT4706	0.15	-1.6
6,175,883	-		BT4706	0.15	-0.0
6,175,883	-		BT4706	0.15	-0.0
6,175,889	-		BT4706	0.16	-1.6
6,175,889	-		BT4706	0.16	-1.0
6,175,923	+		BT4706	0.19	-0.9
6,175,923	+		BT4706	0.19	+1.0
6,175,924	-		BT4706	0.19	-1.6
6,175,960	-		BT4706	0.23	+0.6
6,175,960	-		BT4706	0.23	-0.4