Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0245 and BT0246 overlap by 17 nucleotides BT0246 and BT0247 are separated by 53 nucleotides BT0247 and BT0248 are separated by 6 nucleotides
BT0245: BT0245 - ATP-dependent exonuclease sbcC (NCBI ptt file), at 269,319 to 272,183
BT0245
BT0246: BT0246 - putative integral membrane protein, with calcineurin-like phosphoesterase domain (NCBI ptt file), at 272,167 to 273,333
BT0246
BT0247: BT0247 - hypothetical protein (NCBI ptt file), at 273,387 to 273,965
BT0247
BT0248: BT0248 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 273,972 to 274,481
BT0248
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.565 kb on + strand, within BT0245 at 271.685 kb on - strand, within BT0245 at 271.744 kb on + strand, within BT0245 at 271.758 kb on - strand, within BT0245 at 271.800 kb on + strand, within BT0245 at 271.800 kb on + strand, within BT0245 at 271.800 kb on + strand, within BT0245 at 271.817 kb on + strand, within BT0245 at 271.838 kb on + strand, within BT0245 at 271.882 kb on + strand, within BT0245 at 271.882 kb on + strand, within BT0245 at 271.892 kb on - strand, within BT0245 at 272.059 kb on + strand at 272.114 kb on - strand at 272.138 kb on - strand at 272.142 kb on - strand at 272.231 kb on + strand at 272.249 kb on - strand at 272.276 kb on + strand at 272.303 kb on + strand, within BT0246 at 272.303 kb on + strand, within BT0246 at 272.304 kb on - strand, within BT0246 at 272.304 kb on - strand, within BT0246 at 272.350 kb on - strand, within BT0246 at 272.365 kb on + strand, within BT0246 at 272.375 kb on + strand, within BT0246 at 272.390 kb on - strand, within BT0246 at 272.429 kb on - strand, within BT0246 at 272.617 kb on - strand, within BT0246 at 272.661 kb on - strand, within BT0246 at 272.661 kb on - strand, within BT0246 at 272.809 kb on + strand, within BT0246 at 272.810 kb on - strand, within BT0246 at 272.812 kb on + strand, within BT0246 at 272.919 kb on - strand, within BT0246 at 272.919 kb on - strand, within BT0246 at 272.923 kb on + strand, within BT0246 at 272.978 kb on - strand, within BT0246 at 273.182 kb on + strand, within BT0246 at 273.279 kb on - strand at 273.333 kb on + strand at 273.405 kb on - strand at 273.974 kb on - strand at 274.008 kb on - strand at 274.097 kb on + strand, within BT0248 at 274.097 kb on + strand, within BT0248 at 274.097 kb on + strand, within BT0248 at 274.179 kb on + strand, within BT0248
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize; autoclaved 2.5 mg/ml (C) remove 271,565 + BT0245 0.78 -0.1 271,685 - BT0245 0.83 -1.4 271,744 + BT0245 0.85 -2.1 271,758 - BT0245 0.85 -2.0 271,800 + BT0245 0.87 -0.1 271,800 + BT0245 0.87 -1.4 271,800 + BT0245 0.87 -1.6 271,817 + BT0245 0.87 -0.1 271,838 + BT0245 0.88 -0.1 271,882 + BT0245 0.89 -1.1 271,882 + BT0245 0.89 -0.1 271,892 - BT0245 0.90 -0.1 272,059 + +0.3 272,114 - -1.7 272,138 - -1.7 272,142 - -2.1 272,231 + -2.2 272,249 - -0.8 272,276 + -0.1 272,303 + BT0246 0.12 +0.4 272,303 + BT0246 0.12 -0.1 272,304 - BT0246 0.12 -0.1 272,304 - BT0246 0.12 -0.1 272,350 - BT0246 0.16 -1.1 272,365 + BT0246 0.17 -0.1 272,375 + BT0246 0.18 -2.1 272,390 - BT0246 0.19 +0.1 272,429 - BT0246 0.22 -1.1 272,617 - BT0246 0.39 -2.1 272,661 - BT0246 0.42 -0.1 272,661 - BT0246 0.42 -0.1 272,809 + BT0246 0.55 +2.2 272,810 - BT0246 0.55 -1.7 272,812 + BT0246 0.55 -0.1 272,919 - BT0246 0.64 -1.1 272,919 - BT0246 0.64 -2.3 272,923 + BT0246 0.65 -0.3 272,978 - BT0246 0.69 -0.1 273,182 + BT0246 0.87 +1.2 273,279 - +0.9 273,333 + -1.1 273,405 - -1.1 273,974 - -0.1 274,008 - -2.1 274,097 + BT0248 0.25 +0.1 274,097 + BT0248 0.25 -1.7 274,097 + BT0248 0.25 -1.1 274,179 + BT0248 0.41 -0.6
Or see this region's nucleotide sequence