Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_07

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
4,214	+				-0.7
4,315	+				-0.7
4,443	+				-1.0
4,444	-				-1.2
4,448	-				-0.7
4,448	-				-1.0
4,498	+				+0.3
4,520	-				-2.1
4,542	+				-0.7
4,546	+				-1.1
4,561	-				-2.3
4,561	-				-0.8
4,585	+				-2.1
4,585	+				-0.6
4,585	+				-0.7
4,591	+				-1.7
4,603	+				+0.3
4,624	+		p5482_06	0.12	+1.0
4,685	+		p5482_06	0.22	+0.3
4,685	+		p5482_06	0.22	-0.7
4,686	-		p5482_06	0.22	-0.4
4,803	+		p5482_06	0.41	-0.2
4,803	+		p5482_06	0.41	-1.0
4,803	+		p5482_06	0.41	-1.1
4,804	-		p5482_06	0.41	-0.1
4,880	+		p5482_06	0.54	-1.0
4,880	+		p5482_06	0.54	-0.8
4,881	-		p5482_06	0.54	-1.1
4,881	-		p5482_06	0.54	+0.3
4,881	-		p5482_06	0.54	+0.0
4,881	-		p5482_06	0.54	-0.7
4,882	+		p5482_06	0.54	-0.9
4,882	+		p5482_06	0.54	-1.5
4,882	+		p5482_06	0.54	-0.2
4,882	+		p5482_06	0.54	+1.0
4,883	-		p5482_06	0.54	-1.1
4,899	+		p5482_06	0.57	-0.9
4,990	-		p5482_06	0.71	-1.0
5,030	-		p5482_06	0.78	-0.7
5,109	+				-1.2
5,109	+				-1.2
5,116	+				+2.6
5,117	-				-1.3
5,119	+				+0.4
5,119	+				-0.9
5,119	+				+0.8
5,120	-				-0.6
5,120	-				-0.6
5,120	-				-1.3
5,128	+				+0.3
5,128	+				-1.0
5,128	+				+0.3
5,128	+				+0.3
5,128	+				-0.1
5,157	+				-1.0
5,158	-				-1.3
5,165	+				-0.7
5,165	+				+0.6
5,165	+				-0.8
5,166	-				-1.0
5,166	-				+0.3
5,166	-				-0.2
5,171	+				+0.3
5,171	+				-0.4
5,171	+				+0.5
5,171	+				-2.1
5,172	-				-1.1
5,172	-				-1.0
5,172	-				-0.1
5,185	+				-0.6
5,186	-				-1.3
5,186	-				-1.8
5,300	+				-0.9
5,300	+				-0.9
5,301	-				-1.1
5,318	-				+0.3
5,321	+				-0.7
5,321	+				+0.3
5,321	+				-0.5
5,321	+				+0.9
5,322	-				-1.1
5,322	-				-0.3
5,330	-				-0.4
5,358	-				+0.3
5,440	-		p5482_07	0.12	-1.2
5,450	+		p5482_07	0.12	-0.7
5,450	+		p5482_07	0.12	-1.5
5,507	+		p5482_07	0.15	-0.6
5,517	+		p5482_07	0.15	-0.5
5,517	+		p5482_07	0.15	+0.3
5,517	+		p5482_07	0.15	-1.4
5,517	+		p5482_07	0.15	+0.6
5,518	-		p5482_07	0.15	-1.1
5,518	-		p5482_07	0.15	-3.7
5,518	-		p5482_07	0.15	+0.3
5,518	-		p5482_07	0.15	+0.4
5,543	+		p5482_07	0.16	-0.6
5,543	+		p5482_07	0.16	-0.7
5,543	+		p5482_07	0.16	+0.1
5,543	+		p5482_07	0.16	-0.7
5,543	+		p5482_07	0.16	+0.5
5,568	+		p5482_07	0.18	+0.3
5,571	+		p5482_07	0.18	+0.4
5,571	+		p5482_07	0.18	-0.5
5,571	+		p5482_07	0.18	+1.3
5,572	-		p5482_07	0.18	-1.0
5,599	-		p5482_07	0.19	-0.9
5,599	-		p5482_07	0.19	+0.1
5,651	+		p5482_07	0.21	-2.1
5,651	+		p5482_07	0.21	-0.9
5,651	+		p5482_07	0.21	-2.1
5,652	-		p5482_07	0.21	-0.7
5,668	+		p5482_07	0.22	-1.1
5,668	+		p5482_07	0.22	-0.9
5,669	-		p5482_07	0.22	-2.1
5,680	+		p5482_07	0.23	-1.2
5,681	-		p5482_07	0.23	-0.7
5,733	-		p5482_07	0.25	-0.5
5,844	+		p5482_07	0.30	-1.1
5,844	+		p5482_07	0.30	-1.4
5,868	+		p5482_07	0.31	-1.2
5,868	+		p5482_07	0.31	-0.5
5,868	+		p5482_07	0.31	+0.5
5,868	+		p5482_07	0.31	-1.7
5,868	+		p5482_07	0.31	-0.3
5,868	+		p5482_07	0.31	-1.3
5,868	+		p5482_07	0.31	-0.9
5,868	+		p5482_07	0.31	-0.5
5,868	+		p5482_07	0.31	+1.3
5,869	-		p5482_07	0.31	-1.6
5,869	-		p5482_07	0.31	+0.5
5,869	-		p5482_07	0.31	+0.8
5,869	-		p5482_07	0.31	-0.5
5,869	-		p5482_07	0.31	+0.3
5,869	-		p5482_07	0.31	-1.3
5,869	-		p5482_07	0.31	+0.3
5,872	+		p5482_07	0.31	-0.7
5,872	+		p5482_07	0.31	+0.3
5,873	-		p5482_07	0.31	-0.7
5,873	-		p5482_07	0.31	-1.2
5,873	-		p5482_07	0.31	-0.7
5,991	+		p5482_07	0.36	+0.3
5,991	+		p5482_07	0.36	-1.0
5,992	-		p5482_07	0.36	+0.3
5,992	-		p5482_07	0.36	+0.3
6,103	+		p5482_07	0.41	-1.1
6,104	-		p5482_07	0.41	-1.6
6,104	-		p5482_07	0.41	-2.7
6,113	-		p5482_07	0.42	-0.8
6,138	+		p5482_07	0.43	+0.8
6,139	-		p5482_07	0.43	-1.2
6,139	-		p5482_07	0.43	+1.3
6,181	+		p5482_07	0.45	-1.4
6,182	-		p5482_07	0.45	+0.3
6,188	+		p5482_07	0.45	-1.4
6,189	-		p5482_07	0.45	-0.6
6,189	-		p5482_07	0.45	+1.3
6,189	-		p5482_07	0.45	-1.3
6,190	+		p5482_07	0.45	+0.3
6,190	+		p5482_07	0.45	+1.8
6,191	-		p5482_07	0.45	-0.9
6,204	+		p5482_07	0.46	-0.7
6,204	+		p5482_07	0.46	-0.6
6,204	+		p5482_07	0.46	-0.5
6,205	-		p5482_07	0.46	-0.2
6,205	-		p5482_07	0.46	-0.4
6,208	+		p5482_07	0.46	-1.0
6,208	+		p5482_07	0.46	-2.8
6,208	+		p5482_07	0.46	+1.8
6,208	+		p5482_07	0.46	+0.3
6,208	+		p5482_07	0.46	-0.7
6,209	-		p5482_07	0.46	-0.9
6,209	-		p5482_07	0.46	+1.3
6,209	-		p5482_07	0.46	-1.2
6,256	-		p5482_07	0.48	-0.3
6,256	-		p5482_07	0.48	-1.3
6,256	-		p5482_07	0.48	-1.8
6,256	-		p5482_07	0.48	-0.7
6,258	-		p5482_07	0.48	-0.7
6,258	-		p5482_07	0.48	-0.7
6,258	-		p5482_07	0.48	-0.3
6,267	+		p5482_07	0.49	+0.8
6,268	-		p5482_07	0.49	-1.1
6,268	-		p5482_07	0.49	-0.9
6,268	-		p5482_07	0.49	-1.0
6,284	+		p5482_07	0.49	-0.9
6,322	-		p5482_07	0.51	-1.1
6,334	+		p5482_07	0.52	-0.9
6,334	+		p5482_07	0.52	-0.3
6,334	+		p5482_07	0.52	-0.8
6,335	-		p5482_07	0.52	+1.3
6,417	+		p5482_07	0.55	-0.5
6,417	+		p5482_07	0.55	-0.4
6,426	-		p5482_07	0.56	-0.7
6,468	+		p5482_07	0.58	-1.3
6,468	+		p5482_07	0.58	-0.3
6,476	+		p5482_07	0.58	+0.3
6,476	+		p5482_07	0.58	+0.1
6,477	-		p5482_07	0.58	-1.3
6,477	-		p5482_07	0.58	-1.0
6,481	+		p5482_07	0.58	-0.5
6,481	+		p5482_07	0.58	-0.9
6,481	+		p5482_07	0.58	-0.9
6,482	-		p5482_07	0.58	-0.6
6,482	-		p5482_07	0.58	-0.1
6,493	+		p5482_07	0.59	-2.3
6,493	+		p5482_07	0.59	+0.0
6,493	+		p5482_07	0.59	+0.7
6,493	+		p5482_07	0.59	-2.2
6,494	-		p5482_07	0.59	-0.9
6,494	-		p5482_07	0.59	-1.1
6,529	+		p5482_07	0.60	+1.5
6,530	-		p5482_07	0.60	-1.3
6,530	-		p5482_07	0.60	-1.1
6,594	-		p5482_07	0.63	-1.3
6,594	-		p5482_07	0.63	-0.7
6,605	+		p5482_07	0.64	-0.9
6,606	-		p5482_07	0.64	-0.7
6,612	+		p5482_07	0.64	+1.6
6,612	+		p5482_07	0.64	-1.4
6,612	+		p5482_07	0.64	-2.9
6,613	-		p5482_07	0.64	-0.7
6,618	+		p5482_07	0.64	-0.7
6,618	+		p5482_07	0.64	-0.2
6,618	+		p5482_07	0.64	-0.9
6,619	-		p5482_07	0.64	-1.3
6,685	-		p5482_07	0.67	+0.3
6,716	+		p5482_07	0.69	+0.3
6,717	-		p5482_07	0.69	+1.3
6,853	-		p5482_07	0.75	-0.9
6,853	-		p5482_07	0.75	-1.5
6,866	+		p5482_07	0.75	+0.1
6,867	-		p5482_07	0.75	+0.3
6,867	-		p5482_07	0.75	-0.6
6,879	+		p5482_07	0.76	-2.3
6,879	+		p5482_07	0.76	-1.2
6,879	+		p5482_07	0.76	+0.3
6,879	+		p5482_07	0.76	-1.4
6,879	+		p5482_07	0.76	-0.2
6,879	+		p5482_07	0.76	-0.5
6,879	+		p5482_07	0.76	+0.3
6,879	+		p5482_07	0.76	-0.4
6,880	-		p5482_07	0.76	-1.0
6,880	-		p5482_07	0.76	-1.3
6,880	-		p5482_07	0.76	-2.1
6,880	-		p5482_07	0.76	-1.5
6,880	-		p5482_07	0.76	+0.3
6,880	-		p5482_07	0.76	-1.5
6,886	+		p5482_07	0.76	+0.3
6,886	+		p5482_07	0.76	-0.6
6,886	+		p5482_07	0.76	-0.4
6,886	+		p5482_07	0.76	-0.0
6,887	-		p5482_07	0.76	+0.3
6,887	-		p5482_07	0.76	-1.4
6,912	+		p5482_07	0.77	-2.1
6,913	-		p5482_07	0.77	-0.6
6,939	+		p5482_07	0.79	+1.6
6,939	+		p5482_07	0.79	+1.8
6,940	-		p5482_07	0.79	-1.3
6,940	-		p5482_07	0.79	-1.3
6,940	-		p5482_07	0.79	-1.7
6,945	+		p5482_07	0.79	-0.7
6,946	-		p5482_07	0.79	-0.8
6,967	+		p5482_07	0.80	-0.2
6,976	-		p5482_07	0.80	+0.3
6,976	-		p5482_07	0.80	+0.5
6,988	-		p5482_07	0.81	+0.3
7,011	+		p5482_07	0.82	-0.8
7,011	-		p5482_07	0.82	+1.3
7,011	-		p5482_07	0.82	+0.3
7,036	-		p5482_07	0.83	+0.3
7,054	+		p5482_07	0.84	+0.8
7,054	+		p5482_07	0.84	+0.3
7,082	+		p5482_07	0.85	+1.6
7,083	-		p5482_07	0.85	-1.7
7,083	-		p5482_07	0.85	-1.4
7,083	-		p5482_07	0.85	-0.9
7,083	-		p5482_07	0.85	-0.6
7,083	-		p5482_07	0.85	-3.1
7,110	+		p5482_07	0.86	-2.1
7,110	+		p5482_07	0.86	-1.3
7,110	+		p5482_07	0.86	-0.3
7,110	+		p5482_07	0.86	-0.5
7,110	+		p5482_07	0.86	+0.7
7,111	-		p5482_07	0.86	-0.7
7,111	-		p5482_07	0.86	-1.1
7,111	-		p5482_07	0.86	+0.8
7,112	+		p5482_07	0.86	-0.3
7,113	-		p5482_07	0.86	-0.7
7,113	-		p5482_07	0.86	-0.7
7,113	-		p5482_07	0.86	-0.7
7,116	+		p5482_07	0.86	+2.3
7,117	-		p5482_07	0.86	-1.3
7,117	-		p5482_07	0.86	-0.4
7,117	-		p5482_07	0.86	-0.9
7,117	-		p5482_07	0.86	-1.3
7,117	-		p5482_07	0.86	-0.6
7,117	-		p5482_07	0.86	+1.8
7,142	+		p5482_07	0.88	+0.5
7,315	+				-0.7
7,315	+				-1.7
7,316	-				-1.7
7,316	-				-0.8
7,316	-				+0.3
7,316	-				-0.2
7,316	-				+0.3
7,343	+				+0.3
7,343	+				+0.3
7,345	+				-2.3
7,345	+				-0.5
7,346	-				-1.7
7,346	-				+0.6
7,346	-				-0.3
7,346	-				+1.0
7,346	-				-0.7
7,361	+				-0.7
7,362	-				+0.3
7,363	+				-0.0
7,363	+				-0.7
7,363	+				-1.1
7,364	-				-1.5
7,374	+				-1.4
7,417	+				-1.7
7,417	+				-0.7
7,417	+				-1.1
7,417	+				-1.0
7,422	+				-1.5
7,422	+				+0.3
7,422	+				-0.8
7,422	+				+0.3
7,423	-				-1.7
7,432	+				-2.1
7,432	+				-0.7
7,432	+				-0.7
7,432	+				-2.3
7,432	+				-1.4
7,432	+				-1.8
7,432	+				-1.3
7,432	+				-0.9
7,432	+				-2.2
7,433	-				-0.7
7,433	-				-1.7
7,433	-				-3.0
7,433	-				-1.7
7,433	-				-0.3
7,434	+				-0.7
7,434	+				-1.5
7,434	+				-1.7
7,435	-				-1.3
7,437	+				-1.2
7,437	+				-0.8
7,437	+				+0.8
7,437	+				-1.5
7,438	-				-2.1
7,438	-				-2.1
7,440	+				-1.4
7,441	-				-1.5
7,442	+				+0.3
7,442	+				-1.2
7,443	-				-1.3
7,526	-				-1.0
7,563	-				-1.4
7,597	+		p5482_08	0.12	-1.6
7,598	-		p5482_08	0.12	-1.2
7,646	+		p5482_08	0.15	-2.4
7,646	+		p5482_08	0.15	-0.7
7,647	-		p5482_08	0.16	-2.0
7,647	-		p5482_08	0.16	-0.9
7,654	+		p5482_08	0.16	+0.3
7,655	-		p5482_08	0.16	-1.3
7,656	+		p5482_08	0.16	-0.7
7,656	+		p5482_08	0.16	-1.3
7,656	+		p5482_08	0.16	-1.8
7,656	+		p5482_08	0.16	-2.1
7,656	+		p5482_08	0.16	-1.3
7,656	+		p5482_08	0.16	-0.7
7,656	+		p5482_08	0.16	-2.1
7,656	+		p5482_08	0.16	-2.3
7,656	+		p5482_08	0.16	+0.3
7,656	+		p5482_08	0.16	-1.7
7,656	+		p5482_08	0.16	-1.1
7,656	+		p5482_08	0.16	+0.3
7,656	+		p5482_08	0.16	-1.3
7,657	-		p5482_08	0.16	+0.3
7,657	-		p5482_08	0.16	+0.8
7,657	-		p5482_08	0.16	-2.4
7,657	-		p5482_08	0.16	-0.7
7,657	-		p5482_08	0.16	+0.3
7,657	-		p5482_08	0.16	-1.7
7,657	-		p5482_08	0.16	-0.7
7,657	-		p5482_08	0.16	-1.1
7,657	-		p5482_08	0.16	-2.7
7,657	-		p5482_08	0.16	-1.6
7,657	-		p5482_08	0.16	-1.5
7,657	-		p5482_08	0.16	-1.5
7,657	-		p5482_08	0.16	-1.8
7,658	+		p5482_08	0.16	-1.8
7,658	+		p5482_08	0.16	-2.1
7,658	+		p5482_08	0.16	-1.9
7,658	+		p5482_08	0.16	-2.2
7,658	+		p5482_08	0.16	-0.5
7,658	+		p5482_08	0.16	-1.7
7,658	+		p5482_08	0.16	-0.7
7,659	-		p5482_08	0.16	-1.7
7,686	+		p5482_08	0.18	-0.3
7,687	-		p5482_08	0.18	-0.9
7,690	+		p5482_08	0.19	-1.4
7,690	+		p5482_08	0.19	-0.2
7,690	+		p5482_08	0.19	-1.7
7,690	+		p5482_08	0.19	-0.7
7,691	-		p5482_08	0.19	-1.9
7,721	+		p5482_08	0.21	-2.6
7,721	+		p5482_08	0.21	-2.1
7,722	-		p5482_08	0.21	-2.4
7,740	+		p5482_08	0.22	-0.7
7,740	+		p5482_08	0.22	-1.3
7,740	+		p5482_08	0.22	-2.3
7,740	+		p5482_08	0.22	-0.5
7,741	-		p5482_08	0.22	-2.2
7,741	-		p5482_08	0.22	-2.4
7,744	+		p5482_08	0.22	-0.1
7,744	+		p5482_08	0.22	-0.7
7,745	-		p5482_08	0.22	-2.9
7,850	+		p5482_08	0.30	-2.1
7,850	+		p5482_08	0.30	-0.8
7,851	-		p5482_08	0.30	-1.4
7,851	-		p5482_08	0.30	-1.4
7,851	-		p5482_08	0.30	+0.3
7,851	-		p5482_08	0.30	-1.2
7,860	+		p5482_08	0.30	-0.4
7,860	+		p5482_08	0.30	-0.6
7,861	-		p5482_08	0.30	-1.7
7,861	-		p5482_08	0.30	-0.7
7,861	-		p5482_08	0.30	-1.3
7,926	-		p5482_08	0.35	-1.3
7,928	+		p5482_08	0.35	-1.8
7,928	+		p5482_08	0.35	-0.2
7,928	+		p5482_08	0.35	-1.7
7,929	-		p5482_08	0.35	-1.7
7,929	-		p5482_08	0.35	-1.9
7,929	-		p5482_08	0.35	-1.3
7,992	+		p5482_08	0.40	-1.8
7,992	+		p5482_08	0.40	-0.2
7,992	+		p5482_08	0.40	+0.3
8,113	+		p5482_08	0.48	+0.5
8,114	-		p5482_08	0.48	-2.6
8,117	+		p5482_08	0.48	-1.3
8,117	+		p5482_08	0.48	-2.3
8,117	+		p5482_08	0.48	+0.5
8,117	+		p5482_08	0.48	+0.3
8,118	-		p5482_08	0.48	-2.1
8,118	-		p5482_08	0.48	+0.3
8,118	-		p5482_08	0.48	-2.1
8,128	-		p5482_08	0.49	-1.5
8,128	-		p5482_08	0.49	-1.5
8,138	+		p5482_08	0.50	-0.3
8,138	+		p5482_08	0.50	+0.3
8,138	+		p5482_08	0.50	-0.7
8,138	+		p5482_08	0.50	-1.7
8,138	+		p5482_08	0.50	-1.4
8,139	-		p5482_08	0.50	-1.7
8,139	-		p5482_08	0.50	-1.2
8,139	-		p5482_08	0.50	+0.3
8,170	+		p5482_08	0.52	+0.3
8,170	+		p5482_08	0.52	+0.6
8,170	+		p5482_08	0.52	-3.1
8,170	+		p5482_08	0.52	-1.4
8,170	+		p5482_08	0.52	-1.6
8,170	+		p5482_08	0.52	-0.4
8,171	-		p5482_08	0.52	+0.3
8,171	-		p5482_08	0.52	-2.2
8,171	-		p5482_08	0.52	-2.3
8,171	-		p5482_08	0.52	-1.1
8,171	-		p5482_08	0.52	-0.7
8,171	-		p5482_08	0.52	-1.4
8,171	-		p5482_08	0.52	-2.7
8,171	-		p5482_08	0.52	-2.5
8,207	+		p5482_08	0.54	-1.9
8,208	-		p5482_08	0.55	-1.9
8,248	+		p5482_08	0.57	-1.7
8,248	+		p5482_08	0.57	-1.7
8,278	-		p5482_08	0.59	-1.3
8,279	+		p5482_08	0.59	-3.1
8,279	+		p5482_08	0.59	-1.1
8,341	+		p5482_08	0.64	-1.0
8,402	+		p5482_08	0.68	-0.6
8,402	+		p5482_08	0.68	-0.6
8,410	+		p5482_08	0.69	+0.4
8,410	+		p5482_08	0.69	-2.7
8,411	-		p5482_08	0.69	-3.4
8,411	-		p5482_08	0.69	-1.5