Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2212

Experiment: amylopectin from maize; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	amylopectin from maize; autoclaved 2.5 mg/ml (C)
2,779,174	+		BT2211	0.29	+0.0
2,779,188	+		BT2211	0.31	-0.8
2,779,213	+		BT2211	0.32	-2.0
2,779,214	-		BT2211	0.32	-1.8
2,779,328	-		BT2211	0.41	-2.3
2,779,389	-		BT2211	0.46	+0.0
2,779,433	+		BT2211	0.49	-0.3
2,779,433	+		BT2211	0.49	-1.4
2,779,496	+		BT2211	0.54	+0.0
2,779,501	-		BT2211	0.54	-0.7
2,779,547	-		BT2211	0.58	-0.9
2,779,573	+		BT2211	0.60	+0.0
2,779,574	-		BT2211	0.60	-0.2
2,779,623	+		BT2211	0.64	-0.9
2,779,746	+		BT2211	0.73	-0.6
2,779,746	+		BT2211	0.73	-1.6
2,779,813	+		BT2211	0.78	+1.0
2,779,821	-		BT2211	0.79	+0.5
2,779,957	+		BT2211	0.89	-1.3
2,779,958	-		BT2211	0.89	-0.4
2,779,958	-		BT2211	0.89	+1.0
2,779,958	-		BT2211	0.89	-0.5
2,779,959	+		BT2211	0.89	-0.9
2,779,960	-		BT2211	0.89	+0.0
2,779,960	-		BT2211	0.89	+0.0
2,780,048	+				+0.0
2,780,076	+				-0.5
2,780,077	-				-2.3
2,780,379	-		BT2212	0.23	-1.3
2,780,380	+		BT2212	0.23	-3.8
2,780,424	-		BT2212	0.27	-1.0
2,780,436	+		BT2212	0.29	+0.0
2,780,436	+		BT2212	0.29	-1.3
2,780,443	+		BT2212	0.29	-0.2
2,780,524	+		BT2212	0.38	+1.0
2,780,538	+		BT2212	0.39	-1.8
2,780,538	+		BT2212	0.39	-0.4
2,780,582	+		BT2212	0.43	-2.6
2,780,676	+		BT2212	0.53	-0.2
2,780,681	+		BT2212	0.54	-1.5
2,780,682	-		BT2212	0.54	-0.6
2,780,698	-		BT2212	0.55	-0.7
2,780,719	+		BT2212	0.58	-2.0
2,780,720	-		BT2212	0.58	-1.3
2,780,795	-		BT2212	0.65	-1.0
2,780,848	-		BT2212	0.71	-1.0
2,780,987	-		BT2212	0.85	-1.9
2,781,132	+				+0.4
2,781,132	+				+1.6
2,781,136	+				-0.9
2,781,146	-				-0.6
2,781,146	-				-2.0
2,781,180	-				+0.6
2,781,367	+		BT2213	0.17	-2.1
2,781,438	-		BT2213	0.23	-1.3
2,781,503	+		BT2213	0.28	-1.1
2,781,503	+		BT2213	0.28	-2.0
2,781,541	+		BT2213	0.31	-1.0
2,781,542	-		BT2213	0.31	-1.2
2,781,617	+		BT2213	0.37	-0.2
2,781,617	+		BT2213	0.37	+1.0
2,781,619	+				-1.0
2,781,676	+		BT2213	0.42	-1.2
2,781,787	+		BT2213	0.50	-1.0
2,781,788	-		BT2213	0.51	+1.0
2,781,788	-		BT2213	0.51	-1.2
2,781,968	-		BT2213	0.65	-2.2
2,782,034	-		BT2213	0.70	+1.0
2,782,055	+		BT2213	0.71	-2.0
2,782,055	+		BT2213	0.71	+0.7
2,782,100	+		BT2213	0.75	+0.3
2,782,100	+		BT2213	0.75	-0.7
2,782,101	-		BT2213	0.75	-1.3
2,782,101	-		BT2213	0.75	-2.0
2,782,101	-		BT2213	0.75	-0.6