Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4110

Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; autoclaved 2.5 mg/ml (C)
5,373,176	+		BT4109	0.26	-1.2
5,373,209	-		BT4109	0.30	+0.0
5,373,283	-		BT4109	0.37	+0.0
5,373,346	-		BT4109	0.44	-2.8
5,373,402	+		BT4109	0.49	+1.0
5,373,403	-		BT4109	0.50	-1.2
5,373,403	-		BT4109	0.50	-0.6
5,373,487	-		BT4109	0.58	-1.0
5,373,517	-		BT4109	0.61	+0.0
5,373,535	-		BT4109	0.63	-2.6
5,373,575	-		BT4109	0.67	+0.0
5,373,575	-		BT4109	0.67	-2.3
5,373,575	-		BT4109	0.67	+0.0
5,373,575	-		BT4109	0.67	+2.0
5,373,870	+				+0.0
5,373,885	+				+1.0
5,373,890	-				+0.0
5,373,890	-				+0.6
5,373,890	-				-1.3
5,373,956	+				+0.4
5,373,996	-				-2.8
5,374,006	+				-1.9
5,374,032	-				+1.0
5,374,049	-				-2.0
5,374,059	-				-3.6
5,374,063	+				-2.0
5,374,064	-				-0.6
5,374,116	-				+0.4
5,374,152	+				-1.0
5,374,181	+				+0.0
5,374,181	+				-1.6
5,374,182	-				-1.6
5,374,213	+				-1.0
5,374,214	-				+0.0
5,374,214	-				-2.0
5,374,223	+				+0.0
5,374,223	+				+0.0
5,374,311	+		BT4110	0.11	+0.0
5,374,311	+		BT4110	0.11	-2.0
5,374,558	-		BT4110	0.26	-1.0
5,374,641	-		BT4110	0.31	-1.0
5,374,641	-		BT4110	0.31	-0.5
5,374,692	-		BT4110	0.35	-1.6
5,374,692	-		BT4110	0.35	-1.3
5,374,761	+		BT4110	0.39	-1.3
5,374,792	+		BT4110	0.41	-1.2
5,374,830	+		BT4110	0.43	-2.1
5,374,830	+		BT4110	0.43	-2.5
5,374,848	+		BT4110	0.44	-1.0
5,374,849	-		BT4110	0.44	-1.0
5,374,849	-		BT4110	0.44	-1.3
5,374,849	-		BT4110	0.44	+2.0
5,374,935	-		BT4110	0.50	-3.2
5,374,935	-		BT4110	0.50	+0.0
5,374,941	-		BT4110	0.50	-1.8
5,375,000	+		BT4110	0.54	-3.7
5,375,001	-		BT4110	0.54	-1.0
5,375,078	+		BT4110	0.59	-2.8
5,375,112	+		BT4110	0.61	-1.0
5,375,113	-		BT4110	0.61	+1.6
5,375,253	-		BT4110	0.69	-0.4
5,375,256	+		BT4110	0.70	+0.0
5,375,257	-		BT4110	0.70	+0.0
5,375,257	-		BT4110	0.70	-1.6
5,375,277	+		BT4110	0.71	-1.8
5,375,292	+		BT4110	0.72	-1.6
5,375,332	+		BT4110	0.74	-1.5
5,375,352	+		BT4110	0.76	-1.6
5,375,355	-		BT4110	0.76	-1.0
5,375,361	-		BT4110	0.76	+0.3
5,375,418	+		BT4110	0.80	-3.5
5,375,419	-		BT4110	0.80	-1.2
5,375,467	+		BT4110	0.83	+1.0
5,375,467	+		BT4110	0.83	-1.7
5,375,468	-		BT4110	0.83	-0.8
5,375,468	-		BT4110	0.83	-0.6
5,375,506	+		BT4110	0.85	-1.3
5,375,507	-		BT4110	0.85	-1.1
5,375,535	-		BT4110	0.87	-2.5
5,375,601	+				-0.3
5,375,742	+				-1.0
5,375,754	-				+0.0
5,375,762	-				-2.1
5,375,780	-				-4.2
5,375,805	+				+0.0
5,375,806	-				-1.6
5,375,806	-				-1.9
5,375,809	-				+0.0
5,375,815	-				-1.6
5,375,827	-				-1.0
5,375,833	-				-3.1
5,375,859	+				-0.8
5,376,017	+				-2.2
5,376,039	-				-1.4
5,376,075	-				+0.0
5,376,075	-				-1.0
5,376,103	-				-2.7
5,376,187	+				-2.5
5,376,187	+				-2.4
5,376,188	-				+0.0
5,376,188	-				-3.2
5,376,188	-				+1.0
5,376,192	-				+0.0
5,376,193	+				+1.0
5,376,290	+		BT4111	0.11	-2.0
5,376,291	-		BT4111	0.11	-1.3
5,376,291	-		BT4111	0.11	-2.0
5,376,308	-		BT4111	0.11	-2.7
5,376,308	-		BT4111	0.11	-3.3
5,376,415	-		BT4111	0.13	-2.0
5,376,443	+		BT4111	0.14	-2.8
5,376,444	-		BT4111	0.14	-1.5
5,376,444	-		BT4111	0.14	-1.0
5,376,555	-		BT4111	0.16	-0.0
5,376,611	-		BT4111	0.18	-1.2
5,376,617	-		BT4111	0.18	-1.0
5,376,617	-		BT4111	0.18	-1.6
5,376,640	+		BT4111	0.18	-4.0
5,376,640	+		BT4111	0.18	-0.0
5,376,641	-		BT4111	0.18	-2.0
5,376,700	+		BT4111	0.20	-2.9
5,376,707	+		BT4111	0.20	-1.8
5,376,707	+		BT4111	0.20	-0.4