Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2882

Experiment: polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
3,601,002	-		BT2880	0.77	-0.0
3,601,002	-		BT2880	0.77	+1.0
3,601,002	-		BT2880	0.77	-0.6
3,601,077	+		BT2880	0.84	-0.6
3,601,078	-		BT2880	0.85	-1.0
3,601,078	-		BT2880	0.85	-0.6
3,601,079	+		BT2880	0.85	-0.6
3,601,080	-		BT2880	0.85	-1.9
3,601,114	+		BT2880	0.88	-0.7
3,601,168	+				-0.0
3,601,224	+				-1.3
3,601,225	-				-1.8
3,601,225	-				-0.8
3,601,227	+				-1.0
3,601,227	+				+1.0
3,601,228	-				-1.5
3,601,427	-		BT2881	0.27	-0.3
3,601,488	+		BT2881	0.35	-1.0
3,601,489	-		BT2881	0.36	-0.1
3,601,489	-		BT2881	0.36	-1.6
3,601,565	+		BT2881	0.46	-1.0
3,601,594	+		BT2881	0.50	-0.6
3,601,594	+		BT2881	0.50	-1.0
3,601,595	-		BT2881	0.50	+1.0
3,601,600	-		BT2881	0.51	+0.8
3,601,680	-		BT2881	0.62	-1.1
3,601,680	-		BT2881	0.62	-0.4
3,601,680	-		BT2881	0.62	-1.0
3,601,681	+		BT2881	0.62	-1.1
3,601,693	-		BT2881	0.64	-0.0
3,601,711	+		BT2881	0.67	+0.5
3,601,711	+		BT2881	0.67	-0.6
3,601,726	+		BT2881	0.69	-2.0
3,601,744	+		BT2881	0.71	-1.0
3,601,745	-		BT2881	0.71	-1.3
3,601,749	+		BT2881	0.72	+1.6
3,601,752	-		BT2881	0.72	-0.0
3,601,763	+		BT2881	0.74	-1.0
3,601,817	-		BT2881	0.81	-1.3
3,601,841	-		BT2881	0.85	-1.6
3,601,841	-		BT2881	0.85	-0.1
3,601,869	+		BT2881	0.89	-2.6
3,601,869	+		BT2881	0.89	-0.0
3,601,897	-				-0.4
3,601,897	-				-1.3
3,601,897	-				-0.6
3,601,933	-				-0.4
3,601,942	+				-1.0
3,601,942	+				-1.4
3,601,942	+				+0.1
3,601,945	-				-0.0
3,601,982	+				-2.1
3,601,983	-				-0.6
3,601,983	-				+1.0
3,602,114	-		BT2882	0.13	+0.6
3,602,134	-		BT2882	0.15	+1.0
3,602,139	+		BT2882	0.16	-1.0
3,602,140	-		BT2882	0.16	-0.6
3,602,232	-		BT2882	0.25	-1.0
3,602,236	-		BT2882	0.26	-2.0
3,602,236	-		BT2882	0.26	-2.0
3,602,309	-		BT2882	0.33	-1.2
3,602,315	+		BT2882	0.34	-0.6
3,602,316	-		BT2882	0.34	-0.0
3,602,369	+		BT2882	0.39	-0.0
3,602,387	-		BT2882	0.41	-1.0
3,602,389	-		BT2882	0.41	-2.3
3,602,390	+		BT2882	0.41	-0.7
3,602,391	-		BT2882	0.42	-1.0
3,602,391	-		BT2882	0.42	-0.3
3,602,392	+		BT2882	0.42	-2.0
3,602,392	+		BT2882	0.42	+1.0
3,602,393	-		BT2882	0.42	+1.6
3,602,409	-		BT2882	0.43	+0.8
3,602,450	-		BT2882	0.48	+0.4
3,602,560	+		BT2882	0.59	-0.6
3,602,632	+		BT2882	0.66	-1.0
3,602,633	-		BT2882	0.66	-0.0
3,602,677	+		BT2882	0.71	+1.0
3,602,679	+		BT2882	0.71	+0.4
3,602,679	+		BT2882	0.71	-1.1
3,602,681	+		BT2882	0.71	-0.9
3,602,681	+		BT2882	0.71	+2.0
3,602,681	+		BT2882	0.71	-1.0
3,602,681	+		BT2882	0.71	-0.5
3,602,802	+		BT2882	0.84	-0.7
3,602,838	-		BT2882	0.88	-1.2
3,602,838	-		BT2882	0.88	-0.8
3,602,866	+				-0.0
3,602,866	+				-3.3
3,602,867	-				-0.0
3,602,899	+				-0.0
3,602,899	+				-2.0
3,602,900	-				-0.0
3,602,904	-				-1.8
3,602,916	+				-1.6
3,602,918	+				-0.4
3,602,934	+				-0.0
3,602,934	+				-0.6
3,602,938	-				-0.0
3,602,970	+				-1.3
3,602,973	-				-0.0
3,602,979	-				-0.8
3,602,980	+				-0.7
3,602,980	+				-1.0
3,602,980	+				-1.1
3,602,980	+				-0.7
3,602,981	-				-1.2
3,602,981	-				-1.6
3,602,982	+				+1.0
3,602,991	+				-0.7
3,602,991	+				-1.4
3,602,991	+				+0.7
3,602,992	-				-1.1
3,602,993	+				+1.6
3,603,003	+				-0.2
3,603,038	-				-1.6
3,603,135	-		BT2883	0.23	-1.4
3,603,152	+		BT2883	0.26	-1.1
3,603,152	+		BT2883	0.26	-0.4
3,603,178	+		BT2883	0.30	-2.0
3,603,234	+		BT2883	0.40	-1.6
3,603,234	+		BT2883	0.40	-2.0
3,603,234	+		BT2883	0.40	-1.0
3,603,277	+		BT2883	0.47	+0.4
3,603,278	-		BT2883	0.47	-1.4
3,603,358	+		BT2883	0.61	-0.0
3,603,362	+		BT2883	0.62	-0.5
3,603,429	+		BT2883	0.73	-1.0
3,603,430	-		BT2883	0.73	+1.0
3,603,453	-		BT2883	0.77	-0.0
3,603,460	+		BT2883	0.78	-1.6
3,603,479	+		BT2883	0.82	-1.1
3,603,480	-		BT2883	0.82	-0.6
3,603,480	-		BT2883	0.82	-0.7
3,603,483	-		BT2883	0.82	-0.0
3,603,507	+		BT2883	0.86	-1.6
3,603,519	+		BT2883	0.88	-1.0
3,603,566	+				-0.0
3,603,609	-				-0.9
3,603,653	-				-0.8
3,603,662	+				+1.0
3,603,662	+				-0.9
3,603,668	+				-1.0
3,603,668	+				-0.7
3,603,681	+		BT2884	0.12	-0.9
3,603,682	-		BT2884	0.12	-0.3
3,603,717	-		BT2884	0.17	-0.0
3,603,731	-		BT2884	0.19	-1.3
3,603,764	-		BT2884	0.24	+1.0
3,603,805	+		BT2884	0.30	-2.3
3,603,805	+		BT2884	0.30	-1.0
3,603,807	+		BT2884	0.30	+0.4
3,603,807	+		BT2884	0.30	+0.6
3,603,810	+		BT2884	0.30	+0.7
3,603,811	-		BT2884	0.30	+2.3
3,603,828	-		BT2884	0.33	-1.6
3,603,850	+		BT2884	0.36	+0.4
3,603,930	-		BT2884	0.48	-0.7
3,603,950	+		BT2884	0.50	-2.3