Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4624

Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato; filtered 2.5 mg/ml (C)
6,049,093	+		BT4622	0.73	+0.9
6,049,094	-		BT4622	0.73	-0.1
6,049,096	-				-1.1
6,049,105	+		BT4622	0.75	-1.9
6,049,106	-		BT4622	0.75	+0.9
6,049,132	+		BT4622	0.78	-2.6
6,049,171	+		BT4622	0.82	-1.4
6,049,274	-				-2.1
6,049,308	-				-1.1
6,049,309	+				-2.1
6,049,346	+				+0.9
6,049,349	+				-2.4
6,049,349	+				-2.2
6,049,540	-		BT4623	0.32	-0.1
6,049,654	+		BT4623	0.50	-2.0
6,049,668	+		BT4623	0.52	-0.1
6,049,668	+		BT4623	0.52	+1.5
6,049,768	-		BT4623	0.67	-0.1
6,049,785	+		BT4623	0.70	-0.1
6,049,785	+		BT4623	0.70	-1.1
6,049,786	-		BT4623	0.70	-0.1
6,049,788	-		BT4623	0.70	-1.3
6,049,789	+		BT4623	0.70	-1.4
6,049,801	-		BT4623	0.72	+0.7
6,049,803	+		BT4623	0.73	-1.6
6,049,804	-		BT4623	0.73	-1.6
6,049,808	+		BT4623	0.73	+0.9
6,049,814	-		BT4623	0.74	-0.7
6,049,836	+		BT4623	0.78	-0.8
6,049,840	-		BT4623	0.78	-0.7
6,049,867	-		BT4623	0.82	-1.1
6,049,870	-		BT4623	0.83	-1.8
6,049,872	+		BT4623	0.83	-1.1
6,049,879	+		BT4623	0.84	-1.2
6,049,880	-		BT4623	0.84	-1.1
6,049,882	-		BT4623	0.85	+0.2
6,049,909	-		BT4623	0.89	-1.3
6,049,913	-		BT4623	0.90	-1.1
6,049,913	-		BT4623	0.90	-1.6
6,049,915	-		BT4623	0.90	-0.1
6,049,964	+				-1.1
6,049,978	+				-2.1
6,049,992	-				-1.8
6,050,000	-				-1.6
6,050,057	-				-1.1
6,050,069	+				-2.1
6,050,069	+				-2.4
6,050,094	+				-1.1
6,050,105	+				-0.4
6,050,105	+				-1.2
6,050,168	+		BT4624	0.12	-1.6
6,050,171	+		BT4624	0.13	-1.1
6,050,211	-		BT4624	0.19	-0.9
6,050,252	-		BT4624	0.25	-0.1
6,050,258	+		BT4624	0.26	-3.8
6,050,277	-		BT4624	0.29	-1.1
6,050,280	-		BT4624	0.29	-1.4
6,050,280	-		BT4624	0.29	-0.6
6,050,289	-		BT4624	0.31	-2.1
6,050,328	-		BT4624	0.37	-2.6
6,050,342	+		BT4624	0.39	-1.1
6,050,363	+		BT4624	0.42	-0.3
6,050,378	+		BT4624	0.44	-1.9
6,050,378	+		BT4624	0.44	-0.3
6,050,378	+		BT4624	0.44	-0.1
6,050,379	-		BT4624	0.44	-3.2
6,050,385	-		BT4624	0.45	+0.9
6,050,385	-		BT4624	0.45	+0.9
6,050,388	+		BT4624	0.46	-1.8
6,050,388	+		BT4624	0.46	-2.4
6,050,390	+		BT4624	0.46	-2.1
6,050,391	-		BT4624	0.46	-1.7
6,050,406	-		BT4624	0.49	-1.6
6,050,407	+		BT4624	0.49	-0.6
6,050,408	-		BT4624	0.49	-1.6
6,050,414	+		BT4624	0.50	-0.1
6,050,415	-		BT4624	0.50	-0.1
6,050,465	+		BT4624	0.58	-2.1
6,050,583	-		BT4624	0.76	-0.5
6,050,587	+		BT4624	0.76	-0.1
6,050,623	+		BT4624	0.82	-2.1
6,050,624	-		BT4624	0.82	-2.6
6,050,624	-		BT4624	0.82	-2.4
6,050,656	+		BT4624	0.87	+0.4
6,050,657	-		BT4624	0.87	-3.1
6,050,696	-				-0.5
6,050,725	-				-1.1
6,050,725	-				-0.1
6,050,729	+				-1.3
6,050,730	-				-0.7
6,050,730	-				-1.9
6,050,747	-				+0.9
6,050,754	-				-1.1
6,050,809	+				-1.4
6,050,809	+				-1.1
6,050,810	-				-1.1
6,050,866	-		BT4625	0.11	-0.2
6,050,938	-		BT4625	0.17	-0.6
6,050,946	-		BT4625	0.18	+0.2
6,050,946	-		BT4625	0.18	-1.1
6,050,946	-		BT4625	0.18	-2.6
6,050,975	+		BT4625	0.20	-2.8
6,050,975	+		BT4625	0.20	-2.1
6,051,021	+		BT4625	0.24	-1.5
6,051,032	+		BT4625	0.24	+0.5
6,051,033	-		BT4625	0.25	-1.1
6,051,056	+		BT4625	0.26	-1.8
6,051,057	-		BT4625	0.26	-2.2
6,051,102	+		BT4625	0.30	-1.5
6,051,102	+		BT4625	0.30	+0.5
6,051,108	+		BT4625	0.30	-1.4
6,051,282	+		BT4625	0.44	+0.9
6,051,309	+		BT4625	0.46	-1.6
6,051,310	-		BT4625	0.47	-0.1
6,051,310	-		BT4625	0.47	-0.9
6,051,312	-		BT4625	0.47	-1.1
6,051,312	-		BT4625	0.47	-1.1
6,051,312	-		BT4625	0.47	-0.1
6,051,330	+		BT4625	0.48	-0.8
6,051,391	+		BT4625	0.53	-1.2
6,051,408	+		BT4625	0.54	-2.9
6,051,408	+		BT4625	0.54	-0.4
6,051,409	-		BT4625	0.54	-2.4
6,051,415	+		BT4625	0.55	-1.3
6,051,415	+		BT4625	0.55	-1.6
6,051,417	+		BT4625	0.55	+0.9
6,051,458	+		BT4625	0.58	-1.1
6,051,459	-		BT4625	0.58	-0.5
6,051,459	-		BT4625	0.58	-1.2
6,051,526	+		BT4625	0.64	-1.5
6,051,526	+		BT4625	0.64	-2.1
6,051,579	-		BT4625	0.68	-1.4
6,051,612	+		BT4625	0.71	-2.4
6,051,613	-		BT4625	0.71	+0.4
6,051,616	+		BT4625	0.71	-1.2
6,051,616	+		BT4625	0.71	-2.4
6,051,617	-		BT4625	0.71	-1.1
6,051,625	-		BT4625	0.72	-0.8
6,051,665	+		BT4625	0.75	-0.1
6,051,673	-		BT4625	0.75	-0.9