Experiment: Pectic galactan from potato; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0214 and BT0215 are separated by 188 nucleotides BT0215 and BT0216 are separated by 22 nucleotides BT0216 and BT0217 are separated by 131 nucleotides BT0217 and BT0218 are separated by 111 nucleotides
BT0214: BT0214 - hypothetical protein (NCBI ptt file), at 237,835 to 238,311
BT0214
BT0215: BT0215 - iron uptake regulatory protein (NCBI ptt file), at 238,500 to 238,928
BT0215
BT0216: BT0216 - putative rubrerythrin (NCBI ptt file), at 238,951 to 239,511
BT0216
BT0217: BT0217 - conserved hypothetical protein (NCBI ptt file), at 239,643 to 240,245
BT0217
BT0218: BT0218 - thioredoxin (TRX) (NCBI ptt file), at 240,357 to 240,821
BT0218
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 238.003 kb on + strand, within BT0214 at 238.010 kb on - strand, within BT0214 at 238.010 kb on - strand, within BT0214 at 238.013 kb on + strand, within BT0214 at 238.014 kb on - strand, within BT0214 at 238.020 kb on + strand, within BT0214 at 238.115 kb on - strand, within BT0214 at 238.124 kb on - strand, within BT0214 at 238.233 kb on + strand, within BT0214 at 238.249 kb on + strand, within BT0214 at 238.294 kb on - strand at 238.325 kb on + strand at 238.327 kb on + strand at 238.328 kb on - strand at 238.351 kb on - strand at 238.389 kb on - strand at 238.392 kb on + strand at 238.393 kb on - strand at 238.607 kb on + strand, within BT0215 at 238.872 kb on + strand, within BT0215 at 238.880 kb on + strand, within BT0215 at 238.880 kb on + strand, within BT0215 at 238.968 kb on + strand at 238.969 kb on - strand at 239.185 kb on + strand, within BT0216 at 239.185 kb on + strand, within BT0216 at 239.186 kb on - strand, within BT0216 at 239.252 kb on - strand, within BT0216 at 239.281 kb on - strand, within BT0216 at 239.424 kb on + strand, within BT0216 at 239.425 kb on - strand, within BT0216 at 239.509 kb on + strand at 239.512 kb on + strand at 239.526 kb on + strand at 239.534 kb on - strand at 239.550 kb on - strand at 239.596 kb on + strand at 239.597 kb on - strand at 239.600 kb on + strand at 239.621 kb on - strand at 239.626 kb on + strand at 239.626 kb on + strand at 239.641 kb on + strand at 239.681 kb on + strand at 239.682 kb on - strand at 239.715 kb on - strand, within BT0217 at 239.747 kb on + strand, within BT0217 at 239.797 kb on + strand, within BT0217 at 239.798 kb on - strand, within BT0217 at 239.876 kb on - strand, within BT0217 at 239.881 kb on + strand, within BT0217 at 239.881 kb on + strand, within BT0217 at 239.883 kb on + strand, within BT0217 at 239.884 kb on - strand, within BT0217 at 239.908 kb on - strand, within BT0217 at 239.908 kb on - strand, within BT0217 at 239.908 kb on - strand, within BT0217 at 240.107 kb on + strand, within BT0217 at 240.184 kb on + strand, within BT0217 at 240.200 kb on + strand at 240.304 kb on + strand at 240.310 kb on - strand at 240.311 kb on + strand at 240.311 kb on + strand at 240.342 kb on + strand at 240.344 kb on + strand at 240.358 kb on + strand at 240.508 kb on - strand, within BT0218
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; filtered 2.5 mg/ml (C) remove 238,003 + BT0214 0.35 -0.4 238,010 - BT0214 0.37 -1.7 238,010 - BT0214 0.37 -2.1 238,013 + BT0214 0.37 +0.3 238,014 - BT0214 0.38 -1.1 238,020 + BT0214 0.39 -0.9 238,115 - BT0214 0.59 -0.1 238,124 - BT0214 0.61 +0.9 238,233 + BT0214 0.83 -1.4 238,249 + BT0214 0.87 +1.9 238,294 - -2.1 238,325 + -1.7 238,327 + +0.1 238,328 - -2.1 238,351 - -0.1 238,389 - -1.7 238,392 + -0.8 238,393 - -0.8 238,607 + BT0215 0.25 -0.1 238,872 + BT0215 0.87 -2.1 238,880 + BT0215 0.89 -2.1 238,880 + BT0215 0.89 -0.5 238,968 + -0.1 238,969 - -0.7 239,185 + BT0216 0.42 -0.8 239,185 + BT0216 0.42 -0.1 239,186 - BT0216 0.42 -2.1 239,252 - BT0216 0.54 -2.1 239,281 - BT0216 0.59 -2.1 239,424 + BT0216 0.84 -2.1 239,425 - BT0216 0.84 -2.4 239,509 + +0.1 239,512 + -0.3 239,526 + -2.5 239,534 - -1.7 239,550 - -1.3 239,596 + -1.1 239,597 - +1.2 239,600 + -1.1 239,621 - -0.1 239,626 + -1.1 239,626 + +1.5 239,641 + -1.1 239,681 + -2.4 239,682 - +2.7 239,715 - BT0217 0.12 -1.4 239,747 + BT0217 0.17 -2.1 239,797 + BT0217 0.26 -1.6 239,798 - BT0217 0.26 +0.5 239,876 - BT0217 0.39 -0.5 239,881 + BT0217 0.39 -1.4 239,881 + BT0217 0.39 -1.1 239,883 + BT0217 0.40 +0.9 239,884 - BT0217 0.40 -0.4 239,908 - BT0217 0.44 +2.5 239,908 - BT0217 0.44 -1.4 239,908 - BT0217 0.44 -0.7 240,107 + BT0217 0.77 -1.1 240,184 + BT0217 0.90 +1.5 240,200 + -0.1 240,304 + -0.1 240,310 - -1.7 240,311 + -0.1 240,311 + -0.9 240,342 + +0.7 240,344 + -2.7 240,358 + +2.2 240,508 - BT0218 0.32 -1.2
Or see this region's nucleotide sequence