Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0378 and BT0379 are separated by 34 nucleotides BT0379 and BT0380 are separated by 4 nucleotides
BT0378: BT0378 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 464,407 to 466,332
BT0378
BT0379: BT0379 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 466,367 to 467,683
BT0379
BT0380: BT0380 - nucleotide sugar epimerase (NCBI ptt file), at 467,688 to 468,761
BT0380
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2 at 465.550 kb on - strand, within BT0378 at 465.550 kb on - strand, within BT0378 at 466.331 kb on - strand at 466.340 kb on - strand at 466.526 kb on + strand, within BT0379 at 466.617 kb on + strand, within BT0379 at 466.627 kb on + strand, within BT0379 at 466.628 kb on - strand, within BT0379 at 466.671 kb on + strand, within BT0379 at 466.726 kb on - strand at 466.726 kb on - strand, within BT0379 at 466.732 kb on + strand, within BT0379 at 466.855 kb on - strand, within BT0379 at 466.856 kb on + strand, within BT0379 at 467.036 kb on - strand, within BT0379 at 467.038 kb on - strand, within BT0379 at 467.068 kb on + strand, within BT0379 at 467.071 kb on + strand, within BT0379 at 467.072 kb on - strand, within BT0379 at 467.097 kb on - strand, within BT0379 at 467.113 kb on + strand, within BT0379 at 467.154 kb on + strand, within BT0379 at 467.361 kb on - strand, within BT0379 at 467.361 kb on - strand, within BT0379 at 467.507 kb on - strand, within BT0379 at 467.697 kb on + strand at 467.697 kb on + strand at 467.697 kb on + strand at 467.828 kb on - strand, within BT0380 at 467.833 kb on - strand, within BT0380 at 468.128 kb on + strand, within BT0380 at 468.144 kb on - strand, within BT0380 at 468.144 kb on - strand, within BT0380 at 468.303 kb on + strand, within BT0380 at 468.326 kb on - strand, within BT0380 at 468.358 kb on - strand, within BT0380 at 468.400 kb on + strand, within BT0380 at 468.474 kb on + strand, within BT0380 at 468.486 kb on - strand, within BT0380 at 468.498 kb on - strand, within BT0380 at 468.645 kb on - strand, within BT0380
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 465,550 - BT0378 0.59 +1.5 465,550 - BT0378 0.59 +0.9 466,331 - -1.3 466,340 - -1.7 466,526 + BT0379 0.12 -2.3 466,617 + BT0379 0.19 +1.9 466,627 + BT0379 0.20 +0.9 466,628 - BT0379 0.20 -1.1 466,671 + BT0379 0.23 -0.1 466,726 - +0.9 466,726 - BT0379 0.27 -1.1 466,732 + BT0379 0.28 -0.1 466,855 - BT0379 0.37 -2.7 466,856 + BT0379 0.37 -1.7 467,036 - BT0379 0.51 -1.7 467,038 - BT0379 0.51 -0.7 467,068 + BT0379 0.53 -1.1 467,071 + BT0379 0.53 -1.1 467,072 - BT0379 0.54 -2.1 467,097 - BT0379 0.55 +0.9 467,113 + BT0379 0.57 -1.7 467,154 + BT0379 0.60 -2.2 467,361 - BT0379 0.75 +0.5 467,361 - BT0379 0.75 -1.7 467,507 - BT0379 0.87 -0.1 467,697 + -0.1 467,697 + -0.7 467,697 + -0.1 467,828 - BT0380 0.13 +0.3 467,833 - BT0380 0.14 -1.1 468,128 + BT0380 0.41 -0.7 468,144 - BT0380 0.42 -0.5 468,144 - BT0380 0.42 -0.1 468,303 + BT0380 0.57 -0.1 468,326 - BT0380 0.59 +0.9 468,358 - BT0380 0.62 -1.1 468,400 + BT0380 0.66 -1.1 468,474 + BT0380 0.73 -0.7 468,486 - BT0380 0.74 -2.1 468,498 - BT0380 0.75 -1.1 468,645 - BT0380 0.89 +0.9
Or see this region's nucleotide sequence