Experiment: Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0375 and BT0376 are separated by 351 nucleotides BT0376 and BT0377 are separated by 6 nucleotides BT0377 and BT0378 are separated by 53 nucleotides
BT0375: BT0375 - integrase (NCBI ptt file), at 462,368 to 463,057
BT0375
BT0376: BT0376 - putative transcriptional regulator (NCBI ptt file), at 463,409 to 463,987
BT0376
BT0377: BT0377 - conserved hypothetical protein (NCBI ptt file), at 463,994 to 464,353
BT0377
BT0378: BT0378 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 464,407 to 466,332
BT0378
Position (kb) 463
464
465 Strain fitness (log2 ratio) -2
-1
0
1 at 462.998 kb on - strand at 463.099 kb on + strand at 463.107 kb on - strand at 463.107 kb on - strand at 463.253 kb on + strand at 463.276 kb on + strand at 463.296 kb on - strand at 463.296 kb on - strand at 463.352 kb on - strand at 463.491 kb on - strand, within BT0376 at 463.704 kb on - strand, within BT0376 at 463.921 kb on + strand, within BT0376 at 463.962 kb on + strand at 463.963 kb on - strand at 463.986 kb on - strand at 464.089 kb on - strand, within BT0377 at 464.148 kb on - strand, within BT0377 at 464.575 kb on - strand at 464.638 kb on - strand, within BT0378 at 464.948 kb on - strand, within BT0378 at 464.957 kb on + strand, within BT0378 at 464.958 kb on - strand, within BT0378 at 465.025 kb on - strand, within BT0378
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato; autoclaved 2.5 mg/ml (C) remove 462,998 - -2.1 463,099 + +1.5 463,107 - -0.9 463,107 - -0.1 463,253 + -2.4 463,276 + -0.7 463,296 - -1.1 463,296 - -0.1 463,352 - -0.1 463,491 - BT0376 0.14 -0.1 463,704 - BT0376 0.51 -1.7 463,921 + BT0376 0.88 -1.1 463,962 + -2.4 463,963 - -0.1 463,986 - +0.5 464,089 - BT0377 0.26 -1.7 464,148 - BT0377 0.43 -1.7 464,575 - -1.1 464,638 - BT0378 0.12 -0.1 464,948 - BT0378 0.28 -0.7 464,957 + BT0378 0.29 -2.1 464,958 - BT0378 0.29 +0.9 465,025 - BT0378 0.32 +1.5
Or see this region's nucleotide sequence