Experiment: KLEB1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24660 and BWI76_RS24665 are separated by 219 nucleotides BWI76_RS24665 and BWI76_RS24670 are separated by 37 nucleotides
BWI76_RS24660: BWI76_RS24660 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 5,139,026 to 5,140,513
_RS24660
BWI76_RS24665: BWI76_RS24665 - LsrR family transcriptional regulator, at 5,140,733 to 5,141,704
_RS24665
BWI76_RS24670: BWI76_RS24670 - autoinducer-2 kinase, at 5,141,742 to 5,143,334
_RS24670
Position (kb)
5140
5141
5142 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5140.343 kb on + strand, within BWI76_RS24660 at 5140.415 kb on - strand at 5140.494 kb on + strand at 5140.502 kb on + strand at 5140.506 kb on + strand at 5140.591 kb on - strand at 5140.846 kb on + strand, within BWI76_RS24665 at 5140.846 kb on - strand, within BWI76_RS24665 at 5141.088 kb on + strand, within BWI76_RS24665 at 5141.126 kb on + strand, within BWI76_RS24665 at 5141.143 kb on + strand, within BWI76_RS24665 at 5141.438 kb on + strand, within BWI76_RS24665 at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.948 kb on - strand, within BWI76_RS24670 at 5142.253 kb on - strand, within BWI76_RS24670 at 5142.313 kb on - strand, within BWI76_RS24670 at 5142.335 kb on + strand, within BWI76_RS24670 at 5142.541 kb on + strand, within BWI76_RS24670
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB1 MOI 0.1 remove 5,140,343 + BWI76_RS24660 0.89 +2.3 5,140,415 - +0.8 5,140,494 + +0.9 5,140,502 + -0.2 5,140,506 + +0.2 5,140,591 - +0.1 5,140,846 + BWI76_RS24665 0.12 +0.1 5,140,846 - BWI76_RS24665 0.12 +0.8 5,141,088 + BWI76_RS24665 0.37 +0.3 5,141,126 + BWI76_RS24665 0.40 +0.7 5,141,143 + BWI76_RS24665 0.42 +0.9 5,141,438 + BWI76_RS24665 0.73 +3.3 5,141,707 + +0.7 5,141,707 + -0.0 5,141,707 + +0.1 5,141,948 - BWI76_RS24670 0.13 -0.3 5,142,253 - BWI76_RS24670 0.32 +0.4 5,142,313 - BWI76_RS24670 0.36 -3.5 5,142,335 + BWI76_RS24670 0.37 +0.5 5,142,541 + BWI76_RS24670 0.50 -0.2
Or see this region's nucleotide sequence