Experiment: KLEB1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19475 and BWI76_RS19480 are separated by 210 nucleotides BWI76_RS19480 and BWI76_RS19485 are separated by 159 nucleotides BWI76_RS19485 and BWI76_RS19490 overlap by 26 nucleotides BWI76_RS19490 and BWI76_RS19495 overlap by 17 nucleotides
BWI76_RS19475: BWI76_RS19475 - signal transduction histidine kinase, at 4,069,457 to 4,071,145
_RS19475
BWI76_RS19480: BWI76_RS19480 - transcriptional regulator, at 4,071,356 to 4,072,114
_RS19480
BWI76_RS19485: BWI76_RS19485 - membrane protein, at 4,072,274 to 4,072,387
_RS19485
BWI76_RS19490: BWI76_RS19490 - binding-protein-dependent transport system inner membrane protein, at 4,072,362 to 4,073,099
_RS19490
BWI76_RS19495: BWI76_RS19495 - ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein, at 4,073,083 to 4,074,030
_RS19495
Position (kb)
4071
4072
4073 Strain fitness (log2 ratio)
-2
-1
0
1 at 4070.380 kb on - strand, within BWI76_RS19475 at 4070.627 kb on - strand, within BWI76_RS19475 at 4070.627 kb on - strand, within BWI76_RS19475 at 4070.779 kb on - strand, within BWI76_RS19475 at 4070.794 kb on - strand, within BWI76_RS19475 at 4071.122 kb on - strand at 4071.333 kb on + strand at 4071.663 kb on + strand, within BWI76_RS19480 at 4071.682 kb on + strand, within BWI76_RS19480 at 4071.906 kb on - strand, within BWI76_RS19480 at 4072.173 kb on - strand at 4072.179 kb on + strand at 4072.249 kb on - strand at 4072.623 kb on - strand, within BWI76_RS19490 at 4072.733 kb on + strand, within BWI76_RS19490 at 4072.941 kb on - strand at 4073.016 kb on - strand, within BWI76_RS19490
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB1 MOI 0.1 remove 4,070,380 - BWI76_RS19475 0.55 +0.2 4,070,627 - BWI76_RS19475 0.69 -0.4 4,070,627 - BWI76_RS19475 0.69 -0.5 4,070,779 - BWI76_RS19475 0.78 -0.2 4,070,794 - BWI76_RS19475 0.79 +0.3 4,071,122 - +0.1 4,071,333 + +0.4 4,071,663 + BWI76_RS19480 0.40 -2.5 4,071,682 + BWI76_RS19480 0.43 -0.2 4,071,906 - BWI76_RS19480 0.72 -2.6 4,072,173 - -1.9 4,072,179 + -0.9 4,072,249 - +0.3 4,072,623 - BWI76_RS19490 0.35 +0.8 4,072,733 + BWI76_RS19490 0.50 +0.4 4,072,941 - -0.8 4,073,016 - BWI76_RS19490 0.89 -0.3
Or see this region's nucleotide sequence