Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17080

Experiment: KLEB1 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17075 and BWI76_RS17080 are separated by 117 nucleotidesBWI76_RS17080 and BWI76_RS17085 are separated by 34 nucleotides BWI76_RS17075: BWI76_RS17075 - 3-deoxy-7-phosphoheptulonate synthase, at 3,543,769 to 3,544,815 _RS17075 BWI76_RS17080: BWI76_RS17080 - hypothetical protein, at 3,544,933 to 3,545,160 _RS17080 BWI76_RS17085: BWI76_RS17085 - hypothetical protein, at 3,545,195 to 3,546,637 _RS17085 Position (kb) 3544 3545 3546Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3544.161 kb on + strand, within BWI76_RS17075at 3544.279 kb on - strand, within BWI76_RS17075at 3544.310 kb on - strand, within BWI76_RS17075at 3544.444 kb on - strand, within BWI76_RS17075at 3545.073 kb on - strand, within BWI76_RS17080at 3545.109 kb on + strand, within BWI76_RS17080at 3545.112 kb on - strand, within BWI76_RS17080at 3545.117 kb on - strand, within BWI76_RS17080at 3545.121 kb on + strand, within BWI76_RS17080at 3545.122 kb on - strand, within BWI76_RS17080at 3545.140 kb on + strandat 3545.180 kb on - strandat 3545.385 kb on - strand, within BWI76_RS17085at 3545.420 kb on - strand, within BWI76_RS17085at 3545.599 kb on - strand, within BWI76_RS17085at 3546.020 kb on - strand, within BWI76_RS17085at 3546.160 kb on + strand, within BWI76_RS17085

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB1 MOI 0.1
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3,544,161 + BWI76_RS17075 0.37 -0.7
3,544,279 - BWI76_RS17075 0.49 -0.3
3,544,310 - BWI76_RS17075 0.52 -2.4
3,544,444 - BWI76_RS17075 0.64 -1.2
3,545,073 - BWI76_RS17080 0.61 -0.9
3,545,109 + BWI76_RS17080 0.77 -1.9
3,545,112 - BWI76_RS17080 0.79 -1.8
3,545,117 - BWI76_RS17080 0.81 -3.8
3,545,121 + BWI76_RS17080 0.82 -1.6
3,545,122 - BWI76_RS17080 0.83 +0.1
3,545,140 + +0.1
3,545,180 - -0.4
3,545,385 - BWI76_RS17085 0.13 -3.0
3,545,420 - BWI76_RS17085 0.16 -0.8
3,545,599 - BWI76_RS17085 0.28 -0.9
3,546,020 - BWI76_RS17085 0.57 +0.2
3,546,160 + BWI76_RS17085 0.67 +2.7

Or see this region's nucleotide sequence