Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15815

Experiment: KLEB1 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15805 and BWI76_RS15810 are separated by 182 nucleotidesBWI76_RS15810 and BWI76_RS15815 overlap by 4 nucleotidesBWI76_RS15815 and BWI76_RS15820 are separated by 322 nucleotidesBWI76_RS15820 and BWI76_RS15825 are separated by 427 nucleotides BWI76_RS15805: BWI76_RS15805 - hypothetical protein, at 3,287,475 to 3,288,164 _RS15805 BWI76_RS15810: BWI76_RS15810 - hypothetical protein, at 3,288,347 to 3,288,781 _RS15810 BWI76_RS15815: BWI76_RS15815 - hypothetical protein, at 3,288,778 to 3,289,425 _RS15815 BWI76_RS15820: BWI76_RS15820 - hypothetical protein, at 3,289,748 to 3,289,951 _RS15820 BWI76_RS15825: BWI76_RS15825 - hypothetical protein, at 3,290,379 to 3,290,573 _RS15825 Position (kb) 3288 3289 3290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3288.160 kb on + strandat 3288.309 kb on + strandat 3288.311 kb on + strandat 3288.408 kb on - strand, within BWI76_RS15810at 3288.618 kb on + strand, within BWI76_RS15810at 3288.639 kb on + strand, within BWI76_RS15810at 3288.675 kb on + strand, within BWI76_RS15810at 3288.683 kb on - strand, within BWI76_RS15810at 3288.686 kb on + strand, within BWI76_RS15810at 3288.686 kb on + strand, within BWI76_RS15810at 3288.688 kb on + strand, within BWI76_RS15810at 3288.688 kb on + strand, within BWI76_RS15810at 3288.688 kb on + strand, within BWI76_RS15810at 3288.735 kb on - strand, within BWI76_RS15810at 3288.832 kb on + strandat 3288.832 kb on + strandat 3288.832 kb on + strandat 3288.833 kb on + strandat 3288.850 kb on - strand, within BWI76_RS15815at 3288.900 kb on + strand, within BWI76_RS15815at 3288.901 kb on + strandat 3288.912 kb on + strand, within BWI76_RS15815at 3288.959 kb on - strand, within BWI76_RS15815at 3288.966 kb on + strand, within BWI76_RS15815at 3289.030 kb on + strand, within BWI76_RS15815at 3289.030 kb on + strand, within BWI76_RS15815at 3289.030 kb on + strand, within BWI76_RS15815at 3289.036 kb on + strand, within BWI76_RS15815at 3289.036 kb on + strandat 3289.036 kb on + strand, within BWI76_RS15815at 3289.036 kb on + strand, within BWI76_RS15815at 3289.038 kb on - strand, within BWI76_RS15815at 3289.038 kb on - strand, within BWI76_RS15815at 3289.044 kb on - strand, within BWI76_RS15815at 3289.044 kb on - strand, within BWI76_RS15815at 3289.044 kb on - strand, within BWI76_RS15815at 3289.197 kb on - strand, within BWI76_RS15815at 3289.202 kb on - strand, within BWI76_RS15815at 3289.202 kb on - strand, within BWI76_RS15815at 3289.297 kb on + strand, within BWI76_RS15815at 3289.305 kb on + strand, within BWI76_RS15815at 3289.311 kb on + strand, within BWI76_RS15815at 3289.336 kb on + strand, within BWI76_RS15815at 3289.392 kb on - strandat 3289.664 kb on + strandat 3289.672 kb on - strandat 3289.753 kb on - strandat 3290.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB1 MOI 0.1
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3,288,160 + -0.3
3,288,309 + +1.7
3,288,311 + -2.2
3,288,408 - BWI76_RS15810 0.14 +1.8
3,288,618 + BWI76_RS15810 0.62 -3.9
3,288,639 + BWI76_RS15810 0.67 -1.9
3,288,675 + BWI76_RS15810 0.75 -0.5
3,288,683 - BWI76_RS15810 0.77 -1.0
3,288,686 + BWI76_RS15810 0.78 -2.6
3,288,686 + BWI76_RS15810 0.78 -2.6
3,288,688 + BWI76_RS15810 0.78 -3.3
3,288,688 + BWI76_RS15810 0.78 -1.7
3,288,688 + BWI76_RS15810 0.78 -0.4
3,288,735 - BWI76_RS15810 0.89 -1.0
3,288,832 + +0.6
3,288,832 + +0.4
3,288,832 + -1.0
3,288,833 + -4.3
3,288,850 - BWI76_RS15815 0.11 -1.5
3,288,900 + BWI76_RS15815 0.19 -0.6
3,288,901 + +0.6
3,288,912 + BWI76_RS15815 0.21 +1.6
3,288,959 - BWI76_RS15815 0.28 -0.0
3,288,966 + BWI76_RS15815 0.29 -2.5
3,289,030 + BWI76_RS15815 0.39 -2.0
3,289,030 + BWI76_RS15815 0.39 -0.5
3,289,030 + BWI76_RS15815 0.39 -0.7
3,289,036 + BWI76_RS15815 0.40 -3.2
3,289,036 + +1.6
3,289,036 + BWI76_RS15815 0.40 -2.6
3,289,036 + BWI76_RS15815 0.40 -4.0
3,289,038 - BWI76_RS15815 0.40 -0.1
3,289,038 - BWI76_RS15815 0.40 -2.9
3,289,044 - BWI76_RS15815 0.41 -0.3
3,289,044 - BWI76_RS15815 0.41 -1.4
3,289,044 - BWI76_RS15815 0.41 -0.0
3,289,197 - BWI76_RS15815 0.65 -3.3
3,289,202 - BWI76_RS15815 0.65 +0.6
3,289,202 - BWI76_RS15815 0.65 -0.7
3,289,297 + BWI76_RS15815 0.80 -0.7
3,289,305 + BWI76_RS15815 0.81 +0.5
3,289,311 + BWI76_RS15815 0.82 -2.9
3,289,336 + BWI76_RS15815 0.86 -0.7
3,289,392 - -2.4
3,289,664 + +1.6
3,289,672 - -0.4
3,289,753 - -0.1
3,290,312 + +0.5

Or see this region's nucleotide sequence