Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17365

Experiment: KLEB1 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17360 and BWI76_RS17365 overlap by 1 nucleotidesBWI76_RS17365 and BWI76_RS17370 are separated by 9 nucleotidesBWI76_RS17370 and BWI76_RS17375 are separated by 10 nucleotides BWI76_RS17360: BWI76_RS17360 - nitrate reductase, at 3,598,066 to 3,600,666 _RS17360 BWI76_RS17365: BWI76_RS17365 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 3,600,666 to 3,604,736 _RS17365 BWI76_RS17370: BWI76_RS17370 - nitrate transporter NasD, at 3,604,746 to 3,605,534 _RS17370 BWI76_RS17375: BWI76_RS17375 - nitrate ABC transporter, permease protein, at 3,605,545 to 3,606,429 _RS17375 Position (kb) 3600 3601 3602 3603 3604 3605Strain fitness (log2 ratio) -2 -1 0 1at 3599.693 kb on + strand, within BWI76_RS17360at 3599.826 kb on + strand, within BWI76_RS17360at 3599.923 kb on + strand, within BWI76_RS17360at 3600.207 kb on - strand, within BWI76_RS17360at 3600.218 kb on - strand, within BWI76_RS17360at 3601.110 kb on + strand, within BWI76_RS17365at 3601.270 kb on + strand, within BWI76_RS17365at 3601.567 kb on - strand, within BWI76_RS17365at 3601.733 kb on + strand, within BWI76_RS17365at 3601.962 kb on + strand, within BWI76_RS17365at 3602.039 kb on - strand, within BWI76_RS17365at 3602.407 kb on - strand, within BWI76_RS17365at 3602.766 kb on + strand, within BWI76_RS17365at 3602.883 kb on + strand, within BWI76_RS17365at 3603.314 kb on + strand, within BWI76_RS17365at 3603.314 kb on + strand, within BWI76_RS17365at 3603.423 kb on - strand, within BWI76_RS17365at 3603.680 kb on + strand, within BWI76_RS17365at 3603.750 kb on - strand, within BWI76_RS17365at 3604.045 kb on - strand, within BWI76_RS17365at 3604.315 kb on - strand, within BWI76_RS17365at 3604.466 kb on - strandat 3604.807 kb on - strandat 3605.341 kb on + strand, within BWI76_RS17370at 3605.452 kb on - strand, within BWI76_RS17370

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB1 MOI 0.1
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3,599,693 + BWI76_RS17360 0.63 +0.6
3,599,826 + BWI76_RS17360 0.68 -2.3
3,599,923 + BWI76_RS17360 0.71 +0.1
3,600,207 - BWI76_RS17360 0.82 +1.2
3,600,218 - BWI76_RS17360 0.83 +1.0
3,601,110 + BWI76_RS17365 0.11 -0.1
3,601,270 + BWI76_RS17365 0.15 -0.6
3,601,567 - BWI76_RS17365 0.22 +0.6
3,601,733 + BWI76_RS17365 0.26 +0.6
3,601,962 + BWI76_RS17365 0.32 +1.1
3,602,039 - BWI76_RS17365 0.34 +1.1
3,602,407 - BWI76_RS17365 0.43 -0.1
3,602,766 + BWI76_RS17365 0.52 +0.7
3,602,883 + BWI76_RS17365 0.54 +0.5
3,603,314 + BWI76_RS17365 0.65 -0.9
3,603,314 + BWI76_RS17365 0.65 +0.9
3,603,423 - BWI76_RS17365 0.68 -0.1
3,603,680 + BWI76_RS17365 0.74 +0.2
3,603,750 - BWI76_RS17365 0.76 +0.1
3,604,045 - BWI76_RS17365 0.83 +0.8
3,604,315 - BWI76_RS17365 0.90 -0.7
3,604,466 - +0.5
3,604,807 - +0.8
3,605,341 + BWI76_RS17370 0.75 +1.3
3,605,452 - BWI76_RS17370 0.89 +0.1

Or see this region's nucleotide sequence