Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13035

Experiment: KLEB1 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13030 and BWI76_RS13035 are separated by 228 nucleotidesBWI76_RS13035 and BWI76_RS13040 are separated by 102 nucleotides BWI76_RS13030: BWI76_RS13030 - site-specific recombinase, phage integrase family protein, at 2,718,794 to 2,719,396 _RS13030 BWI76_RS13035: BWI76_RS13035 - MFS transporter, at 2,719,625 to 2,721,079 _RS13035 BWI76_RS13040: BWI76_RS13040 - transcriptional regulator, at 2,721,182 to 2,721,985 _RS13040 Position (kb) 2719 2720 2721 2722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2718.633 kb on + strandat 2718.776 kb on + strandat 2719.149 kb on + strand, within BWI76_RS13030at 2719.174 kb on + strand, within BWI76_RS13030at 2719.460 kb on + strandat 2719.604 kb on - strandat 2719.681 kb on - strandat 2719.692 kb on + strandat 2719.737 kb on + strandat 2719.737 kb on + strandat 2719.745 kb on - strandat 2719.745 kb on - strandat 2719.745 kb on - strandat 2719.747 kb on + strandat 2719.799 kb on + strand, within BWI76_RS13035at 2719.807 kb on - strand, within BWI76_RS13035at 2719.835 kb on - strand, within BWI76_RS13035at 2720.016 kb on - strand, within BWI76_RS13035at 2720.018 kb on + strand, within BWI76_RS13035at 2720.026 kb on - strand, within BWI76_RS13035at 2720.043 kb on + strand, within BWI76_RS13035at 2720.046 kb on - strand, within BWI76_RS13035at 2720.089 kb on + strand, within BWI76_RS13035at 2720.108 kb on - strand, within BWI76_RS13035at 2720.145 kb on - strand, within BWI76_RS13035at 2720.148 kb on + strand, within BWI76_RS13035at 2720.199 kb on + strand, within BWI76_RS13035at 2720.226 kb on - strand, within BWI76_RS13035at 2720.226 kb on - strand, within BWI76_RS13035at 2720.354 kb on + strand, within BWI76_RS13035at 2720.354 kb on + strand, within BWI76_RS13035at 2720.369 kb on + strand, within BWI76_RS13035at 2720.377 kb on - strandat 2720.377 kb on - strand, within BWI76_RS13035at 2720.403 kb on + strand, within BWI76_RS13035at 2720.444 kb on + strand, within BWI76_RS13035at 2720.452 kb on - strand, within BWI76_RS13035at 2720.611 kb on + strand, within BWI76_RS13035at 2720.611 kb on + strand, within BWI76_RS13035at 2720.619 kb on - strand, within BWI76_RS13035at 2720.619 kb on - strand, within BWI76_RS13035at 2720.699 kb on + strand, within BWI76_RS13035at 2720.783 kb on - strand, within BWI76_RS13035at 2720.793 kb on - strand, within BWI76_RS13035at 2720.934 kb on - strandat 2720.934 kb on - strandat 2721.055 kb on + strandat 2721.094 kb on + strandat 2721.645 kb on - strand, within BWI76_RS13040at 2721.696 kb on + strand, within BWI76_RS13040at 2721.718 kb on - strand, within BWI76_RS13040at 2721.776 kb on - strand, within BWI76_RS13040at 2722.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB1 MOI 0.1
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2,718,633 + -1.0
2,718,776 + +0.0
2,719,149 + BWI76_RS13030 0.59 -2.1
2,719,174 + BWI76_RS13030 0.63 -0.5
2,719,460 + +1.2
2,719,604 - +0.0
2,719,681 - -3.2
2,719,692 + +0.4
2,719,737 + +0.0
2,719,737 + +2.6
2,719,745 - -0.3
2,719,745 - -2.0
2,719,745 - +1.4
2,719,747 + -0.7
2,719,799 + BWI76_RS13035 0.12 +0.4
2,719,807 - BWI76_RS13035 0.13 -1.0
2,719,835 - BWI76_RS13035 0.14 -2.1
2,720,016 - BWI76_RS13035 0.27 -0.7
2,720,018 + BWI76_RS13035 0.27 -3.6
2,720,026 - BWI76_RS13035 0.28 +0.4
2,720,043 + BWI76_RS13035 0.29 -1.9
2,720,046 - BWI76_RS13035 0.29 -0.7
2,720,089 + BWI76_RS13035 0.32 -2.1
2,720,108 - BWI76_RS13035 0.33 +0.4
2,720,145 - BWI76_RS13035 0.36 -2.4
2,720,148 + BWI76_RS13035 0.36 -1.0
2,720,199 + BWI76_RS13035 0.39 -0.6
2,720,226 - BWI76_RS13035 0.41 -2.4
2,720,226 - BWI76_RS13035 0.41 -1.3
2,720,354 + BWI76_RS13035 0.50 -0.0
2,720,354 + BWI76_RS13035 0.50 -1.5
2,720,369 + BWI76_RS13035 0.51 -0.7
2,720,377 - +0.0
2,720,377 - BWI76_RS13035 0.52 -1.3
2,720,403 + BWI76_RS13035 0.53 -1.1
2,720,444 + BWI76_RS13035 0.56 -0.1
2,720,452 - BWI76_RS13035 0.57 -2.1
2,720,611 + BWI76_RS13035 0.68 -0.9
2,720,611 + BWI76_RS13035 0.68 -1.0
2,720,619 - BWI76_RS13035 0.68 -1.1
2,720,619 - BWI76_RS13035 0.68 +0.5
2,720,699 + BWI76_RS13035 0.74 -0.7
2,720,783 - BWI76_RS13035 0.80 -0.4
2,720,793 - BWI76_RS13035 0.80 -0.6
2,720,934 - -1.3
2,720,934 - +0.1
2,721,055 + -0.7
2,721,094 + -1.1
2,721,645 - BWI76_RS13040 0.58 -0.9
2,721,696 + BWI76_RS13040 0.64 +0.9
2,721,718 - BWI76_RS13040 0.67 -1.6
2,721,776 - BWI76_RS13040 0.74 -1.5
2,722,076 - +0.6

Or see this region's nucleotide sequence