Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20595

Experiment: KLEB1 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20570 and BWI76_RS20575 are separated by 259 nucleotidesBWI76_RS20575 and BWI76_RS20580 are separated by 44 nucleotidesBWI76_RS20580 and BWI76_RS20585 are separated by 46 nucleotidesBWI76_RS20585 and BWI76_RS20590 are separated by 4 nucleotidesBWI76_RS20590 and BWI76_RS20595 are separated by 89 nucleotidesBWI76_RS20595 and BWI76_RS20600 are separated by 96 nucleotides BWI76_RS20570: BWI76_RS20570 - glutamate--tRNA ligase, at 4,307,321 to 4,308,739 _RS20570 BWI76_RS20575: BWI76_RS20575 - tRNA-Val, at 4,308,999 to 4,309,074 _RS20575 BWI76_RS20580: BWI76_RS20580 - tRNA-Val, at 4,309,119 to 4,309,194 _RS20580 BWI76_RS20585: BWI76_RS20585 - tRNA-Val, at 4,309,241 to 4,309,316 _RS20585 BWI76_RS20590: BWI76_RS20590 - tRNA-Lys, at 4,309,321 to 4,309,396 _RS20590 BWI76_RS20595: BWI76_RS20595 - LysR family transcriptional regulator, at 4,309,486 to 4,310,370 _RS20595 BWI76_RS20600: BWI76_RS20600 - nucleoside permease, at 4,310,467 to 4,311,723 _RS20600 Position (kb) 4309 4310 4311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4309.435 kb on + strandat 4309.539 kb on + strandat 4309.766 kb on - strand, within BWI76_RS20595at 4309.881 kb on - strand, within BWI76_RS20595at 4309.887 kb on + strandat 4310.179 kb on + strand, within BWI76_RS20595at 4310.179 kb on + strand, within BWI76_RS20595at 4310.179 kb on + strand, within BWI76_RS20595at 4310.179 kb on + strand, within BWI76_RS20595at 4310.179 kb on + strand, within BWI76_RS20595at 4310.187 kb on - strand, within BWI76_RS20595at 4310.187 kb on - strand, within BWI76_RS20595at 4310.272 kb on - strand, within BWI76_RS20595at 4310.394 kb on + strandat 4310.414 kb on + strandat 4310.660 kb on + strand, within BWI76_RS20600at 4310.775 kb on - strand, within BWI76_RS20600at 4310.796 kb on + strand, within BWI76_RS20600at 4310.804 kb on - strand, within BWI76_RS20600at 4310.811 kb on - strand, within BWI76_RS20600at 4310.842 kb on + strand, within BWI76_RS20600at 4310.849 kb on + strand, within BWI76_RS20600at 4311.241 kb on - strand, within BWI76_RS20600at 4311.241 kb on - strand, within BWI76_RS20600at 4311.255 kb on + strand, within BWI76_RS20600at 4311.263 kb on - strand, within BWI76_RS20600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB1 MOI 10
remove
4,309,435 + +2.1
4,309,539 + -0.6
4,309,766 - BWI76_RS20595 0.32 +1.7
4,309,881 - BWI76_RS20595 0.45 -0.1
4,309,887 + -0.6
4,310,179 + BWI76_RS20595 0.78 +0.3
4,310,179 + BWI76_RS20595 0.78 +1.0
4,310,179 + BWI76_RS20595 0.78 -0.8
4,310,179 + BWI76_RS20595 0.78 -2.1
4,310,179 + BWI76_RS20595 0.78 -0.5
4,310,187 - BWI76_RS20595 0.79 -0.2
4,310,187 - BWI76_RS20595 0.79 +0.0
4,310,272 - BWI76_RS20595 0.89 -3.1
4,310,394 + -1.2
4,310,414 + -1.4
4,310,660 + BWI76_RS20600 0.15 -1.8
4,310,775 - BWI76_RS20600 0.25 +0.2
4,310,796 + BWI76_RS20600 0.26 +0.9
4,310,804 - BWI76_RS20600 0.27 -0.1
4,310,811 - BWI76_RS20600 0.27 +0.0
4,310,842 + BWI76_RS20600 0.30 -1.1
4,310,849 + BWI76_RS20600 0.30 -0.4
4,311,241 - BWI76_RS20600 0.62 +1.0
4,311,241 - BWI76_RS20600 0.62 -0.1
4,311,255 + BWI76_RS20600 0.63 -0.1
4,311,263 - BWI76_RS20600 0.63 -1.2

Or see this region's nucleotide sequence