Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15825

Experiment: KLEB1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15815 and BWI76_RS15820 are separated by 322 nucleotidesBWI76_RS15820 and BWI76_RS15825 are separated by 427 nucleotidesBWI76_RS15825 and BWI76_RS15830 are separated by 88 nucleotides BWI76_RS15815: BWI76_RS15815 - hypothetical protein, at 3,288,778 to 3,289,425 _RS15815 BWI76_RS15820: BWI76_RS15820 - hypothetical protein, at 3,289,748 to 3,289,951 _RS15820 BWI76_RS15825: BWI76_RS15825 - hypothetical protein, at 3,290,379 to 3,290,573 _RS15825 BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666 _RS15830 Position (kb) 3290 3291Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3289.392 kb on - strandat 3289.664 kb on + strandat 3289.672 kb on - strandat 3289.753 kb on - strandat 3290.312 kb on + strandat 3290.455 kb on + strand, within BWI76_RS15825at 3290.553 kb on + strand, within BWI76_RS15825at 3290.576 kb on + strandat 3290.743 kb on + strandat 3290.827 kb on + strand, within BWI76_RS15830at 3290.862 kb on - strand, within BWI76_RS15830at 3290.869 kb on + strand, within BWI76_RS15830at 3290.869 kb on + strand, within BWI76_RS15830at 3290.877 kb on - strand, within BWI76_RS15830at 3290.889 kb on + strand, within BWI76_RS15830at 3291.006 kb on + strand, within BWI76_RS15830at 3291.068 kb on - strand, within BWI76_RS15830at 3291.241 kb on + strand, within BWI76_RS15830at 3291.274 kb on - strand, within BWI76_RS15830at 3291.377 kb on - strand, within BWI76_RS15830at 3291.400 kb on + strand, within BWI76_RS15830at 3291.535 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830at 3291.559 kb on - strand, within BWI76_RS15830

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB1 MOI 10
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3,289,392 - -2.2
3,289,664 + +1.8
3,289,672 - -0.9
3,289,753 - -1.1
3,290,312 + +1.7
3,290,455 + BWI76_RS15825 0.39 -3.9
3,290,553 + BWI76_RS15825 0.89 -4.9
3,290,576 + -0.2
3,290,743 + -5.7
3,290,827 + BWI76_RS15830 0.16 -4.7
3,290,862 - BWI76_RS15830 0.20 +0.4
3,290,869 + BWI76_RS15830 0.21 +0.3
3,290,869 + BWI76_RS15830 0.21 +1.4
3,290,877 - BWI76_RS15830 0.21 +1.3
3,290,889 + BWI76_RS15830 0.23 -1.6
3,291,006 + BWI76_RS15830 0.34 -2.9
3,291,068 - BWI76_RS15830 0.40 +0.0
3,291,241 + BWI76_RS15830 0.58 -3.1
3,291,274 - BWI76_RS15830 0.61 -1.3
3,291,377 - BWI76_RS15830 0.71 -0.3
3,291,400 + BWI76_RS15830 0.73 -0.7
3,291,535 - BWI76_RS15830 0.87 +1.6
3,291,559 - BWI76_RS15830 0.89 -1.0
3,291,559 - BWI76_RS15830 0.89 -0.2

Or see this region's nucleotide sequence