Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15770

Experiment: KLEB1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15755 and BWI76_RS15760 overlap by 4 nucleotidesBWI76_RS15760 and BWI76_RS15765 overlap by 17 nucleotidesBWI76_RS15765 and BWI76_RS15770 overlap by 4 nucleotidesBWI76_RS15770 and BWI76_RS15775 overlap by 4 nucleotidesBWI76_RS15775 and BWI76_RS15780 are separated by 48 nucleotides BWI76_RS15755: BWI76_RS15755 - hypothetical protein, at 3,282,451 to 3,282,711 _RS15755 BWI76_RS15760: BWI76_RS15760 - hypothetical protein, at 3,282,708 to 3,282,899 _RS15760 BWI76_RS15765: BWI76_RS15765 - hypothetical protein, at 3,282,883 to 3,283,599 _RS15765 BWI76_RS15770: BWI76_RS15770 - hypothetical protein, at 3,283,596 to 3,283,901 _RS15770 BWI76_RS15775: BWI76_RS15775 - replication protein, at 3,283,898 to 3,284,224 _RS15775 BWI76_RS15780: BWI76_RS15780 - hypothetical protein, at 3,284,273 to 3,285,513 _RS15780 Position (kb) 3283 3284Strain fitness (log2 ratio) -3 -2 -1 0 1at 3282.604 kb on - strand, within BWI76_RS15755at 3282.604 kb on - strand, within BWI76_RS15755at 3282.604 kb on - strand, within BWI76_RS15755at 3282.604 kb on - strand, within BWI76_RS15755at 3282.606 kb on - strand, within BWI76_RS15755at 3282.654 kb on + strand, within BWI76_RS15755at 3282.687 kb on + strandat 3282.729 kb on - strand, within BWI76_RS15760at 3282.890 kb on + strandat 3282.928 kb on - strandat 3283.036 kb on - strand, within BWI76_RS15765at 3283.144 kb on + strand, within BWI76_RS15765at 3283.201 kb on - strand, within BWI76_RS15765at 3283.292 kb on + strand, within BWI76_RS15765at 3283.733 kb on - strand, within BWI76_RS15770at 3283.740 kb on - strand, within BWI76_RS15770at 3283.773 kb on - strand, within BWI76_RS15770at 3283.804 kb on - strand, within BWI76_RS15770at 3283.965 kb on - strand, within BWI76_RS15775

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB1 MOI 10
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3,282,604 - BWI76_RS15755 0.59 -1.6
3,282,604 - BWI76_RS15755 0.59 -0.2
3,282,604 - BWI76_RS15755 0.59 -1.7
3,282,604 - BWI76_RS15755 0.59 -2.4
3,282,606 - BWI76_RS15755 0.59 -0.9
3,282,654 + BWI76_RS15755 0.78 +0.4
3,282,687 + +1.0
3,282,729 - BWI76_RS15760 0.11 -0.4
3,282,890 + -2.6
3,282,928 - -1.0
3,283,036 - BWI76_RS15765 0.21 -0.2
3,283,144 + BWI76_RS15765 0.36 -0.8
3,283,201 - BWI76_RS15765 0.44 -0.5
3,283,292 + BWI76_RS15765 0.57 -0.3
3,283,733 - BWI76_RS15770 0.45 -2.9
3,283,740 - BWI76_RS15770 0.47 -0.9
3,283,773 - BWI76_RS15770 0.58 -3.4
3,283,804 - BWI76_RS15770 0.68 -0.9
3,283,965 - BWI76_RS15775 0.20 +0.4

Or see this region's nucleotide sequence