Experiment: KLEB1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00265 and BWI76_RS00270 are separated by 182 nucleotides BWI76_RS00270 and BWI76_RS00275 are separated by 10 nucleotides BWI76_RS00275 and BWI76_RS00280 are separated by 5 nucleotides BWI76_RS00280 and BWI76_RS00285 are separated by 27 nucleotides
BWI76_RS00265: BWI76_RS00265 - potassium transporter Kup, at 54,258 to 56,126
_RS00265
BWI76_RS00270: BWI76_RS00270 - D-ribose pyranase (EC 5.4.99.62) <small>(from data)</small>, at 56,309 to 56,728
_RS00270
BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244
_RS00275
BWI76_RS00280: BWI76_RS00280 - ribose ABC transporter permease, at 58,250 to 59,215
_RS00280
BWI76_RS00285: BWI76_RS00285 - D-ribose ABC transporter substrate-binding protein, at 59,243 to 60,133
_RS00285
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 55.745 kb on + strand, within BWI76_RS00265 at 55.810 kb on + strand, within BWI76_RS00265 at 55.932 kb on + strand, within BWI76_RS00265 at 55.932 kb on + strand, within BWI76_RS00265 at 55.940 kb on - strand at 56.062 kb on + strand at 56.370 kb on - strand, within BWI76_RS00270 at 56.429 kb on + strand, within BWI76_RS00270 at 56.435 kb on + strand, within BWI76_RS00270 at 56.540 kb on - strand, within BWI76_RS00270 at 56.568 kb on + strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.576 kb on - strand, within BWI76_RS00270 at 56.578 kb on + strand, within BWI76_RS00270 at 56.738 kb on + strand at 56.747 kb on - strand at 56.943 kb on + strand, within BWI76_RS00275 at 57.201 kb on + strand, within BWI76_RS00275 at 57.249 kb on - strand, within BWI76_RS00275 at 57.329 kb on - strand, within BWI76_RS00275 at 57.400 kb on - strand, within BWI76_RS00275 at 57.553 kb on + strand, within BWI76_RS00275 at 57.596 kb on + strand, within BWI76_RS00275 at 57.628 kb on - strand, within BWI76_RS00275 at 57.640 kb on - strand, within BWI76_RS00275 at 57.661 kb on + strand, within BWI76_RS00275 at 57.669 kb on - strand, within BWI76_RS00275 at 57.726 kb on + strand, within BWI76_RS00275 at 57.733 kb on + strand, within BWI76_RS00275 at 57.764 kb on - strand at 57.770 kb on - strand, within BWI76_RS00275 at 57.806 kb on + strand, within BWI76_RS00275 at 57.814 kb on - strand, within BWI76_RS00275 at 57.913 kb on + strand, within BWI76_RS00275 at 58.020 kb on - strand, within BWI76_RS00275 at 58.093 kb on + strand, within BWI76_RS00275 at 58.101 kb on - strand at 58.129 kb on + strand at 58.395 kb on - strand, within BWI76_RS00280 at 58.395 kb on - strand, within BWI76_RS00280 at 58.442 kb on - strand at 58.490 kb on + strand, within BWI76_RS00280 at 58.779 kb on + strand, within BWI76_RS00280 at 58.819 kb on + strand, within BWI76_RS00280 at 58.829 kb on + strand, within BWI76_RS00280 at 59.158 kb on - strand at 59.173 kb on + strand at 59.215 kb on + strand at 59.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB1 MOI 10 remove 55,745 + BWI76_RS00265 0.80 +0.8 55,810 + BWI76_RS00265 0.83 +1.1 55,932 + BWI76_RS00265 0.90 +0.6 55,932 + BWI76_RS00265 0.90 -1.1 55,940 - +0.0 56,062 + -0.4 56,370 - BWI76_RS00270 0.15 -0.2 56,429 + BWI76_RS00270 0.29 -1.0 56,435 + BWI76_RS00270 0.30 -1.0 56,540 - BWI76_RS00270 0.55 -0.2 56,568 + BWI76_RS00270 0.62 -1.2 56,576 - BWI76_RS00270 0.64 -0.5 56,576 - BWI76_RS00270 0.64 -1.0 56,576 - BWI76_RS00270 0.64 -0.6 56,578 + BWI76_RS00270 0.64 -0.9 56,738 + -3.9 56,747 - -1.7 56,943 + BWI76_RS00275 0.14 -0.7 57,201 + BWI76_RS00275 0.31 -0.1 57,249 - BWI76_RS00275 0.34 -2.7 57,329 - BWI76_RS00275 0.39 -0.7 57,400 - BWI76_RS00275 0.44 -0.9 57,553 + BWI76_RS00275 0.54 -0.3 57,596 + BWI76_RS00275 0.57 +0.4 57,628 - BWI76_RS00275 0.59 -1.6 57,640 - BWI76_RS00275 0.60 -0.7 57,661 + BWI76_RS00275 0.61 -0.1 57,669 - BWI76_RS00275 0.62 -2.0 57,726 + BWI76_RS00275 0.66 -0.7 57,733 + BWI76_RS00275 0.66 -0.2 57,764 - +0.1 57,770 - BWI76_RS00275 0.68 -2.1 57,806 + BWI76_RS00275 0.71 +0.4 57,814 - BWI76_RS00275 0.71 -0.7 57,913 + BWI76_RS00275 0.78 -0.1 58,020 - BWI76_RS00275 0.85 -3.6 58,093 + BWI76_RS00275 0.90 +0.2 58,101 - -1.1 58,129 + -1.6 58,395 - BWI76_RS00280 0.15 -0.6 58,395 - BWI76_RS00280 0.15 +0.0 58,442 - -1.5 58,490 + BWI76_RS00280 0.25 -1.5 58,779 + BWI76_RS00280 0.55 -1.3 58,819 + BWI76_RS00280 0.59 -0.3 58,829 + BWI76_RS00280 0.60 -2.8 59,158 - -2.4 59,173 + -1.2 59,215 + -2.8 59,231 - -3.4
Or see this region's nucleotide sequence