Experiment: KLEB20 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03645 and BWI76_RS03650 are separated by 451 nucleotides BWI76_RS03650 and BWI76_RS03655 overlap by 2 nucleotides BWI76_RS03655 and BWI76_RS03660 overlap by 29 nucleotides
BWI76_RS03645: BWI76_RS03645 - hypothetical protein, at 753,023 to 753,934
_RS03645
BWI76_RS03650: BWI76_RS03650 - endoribonuclease SymE, at 754,386 to 754,721
_RS03650
BWI76_RS03655: BWI76_RS03655 - hypothetical protein, at 754,720 to 754,920
_RS03655
BWI76_RS03660: BWI76_RS03660 - hypothetical protein, at 754,892 to 756,757
_RS03660
Position (kb) 754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 753.580 kb on + strand, within BWI76_RS03645 at 753.673 kb on - strand, within BWI76_RS03645 at 753.684 kb on - strand, within BWI76_RS03645 at 753.730 kb on + strand, within BWI76_RS03645 at 753.744 kb on + strand, within BWI76_RS03645 at 753.773 kb on - strand, within BWI76_RS03645 at 753.774 kb on - strand, within BWI76_RS03645 at 753.848 kb on - strand at 753.848 kb on - strand at 753.858 kb on - strand at 753.858 kb on - strand at 753.866 kb on - strand at 753.874 kb on - strand at 753.874 kb on - strand at 753.874 kb on - strand at 753.885 kb on + strand at 753.887 kb on - strand at 753.887 kb on - strand at 753.887 kb on - strand at 753.888 kb on - strand at 753.891 kb on + strand at 753.893 kb on - strand at 753.902 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.903 kb on + strand at 753.910 kb on - strand at 753.910 kb on - strand at 753.910 kb on - strand at 753.910 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.911 kb on - strand at 753.937 kb on + strand at 753.954 kb on - strand at 753.956 kb on - strand at 753.987 kb on + strand at 754.018 kb on - strand at 754.093 kb on - strand at 754.170 kb on + strand at 754.177 kb on + strand at 754.177 kb on + strand at 754.177 kb on + strand at 754.185 kb on + strand at 754.198 kb on + strand at 754.198 kb on + strand at 754.203 kb on + strand at 754.211 kb on + strand at 754.219 kb on - strand at 754.219 kb on - strand at 754.243 kb on + strand at 754.243 kb on + strand at 754.258 kb on - strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.261 kb on + strand at 754.262 kb on + strand at 754.262 kb on + strand at 754.262 kb on - strand at 754.269 kb on - strand at 754.269 kb on - strand at 754.269 kb on - strand at 754.269 kb on - strand at 754.269 kb on - strand at 754.270 kb on - strand at 754.276 kb on - strand at 754.288 kb on + strand at 754.303 kb on + strand at 754.313 kb on + strand at 754.320 kb on - strand at 754.320 kb on - strand at 754.320 kb on - strand at 754.333 kb on + strand at 754.351 kb on + strand at 754.351 kb on + strand at 754.351 kb on + strand at 754.351 kb on + strand at 754.354 kb on - strand at 754.354 kb on - strand at 754.356 kb on + strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.361 kb on + strand at 754.361 kb on + strand at 754.361 kb on + strand at 754.361 kb on + strand at 754.364 kb on - strand at 754.364 kb on - strand at 754.392 kb on - strand at 754.394 kb on + strand at 754.394 kb on + strand at 754.400 kb on - strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.407 kb on - strand at 754.422 kb on + strand, within BWI76_RS03650 at 754.422 kb on + strand, within BWI76_RS03650 at 754.430 kb on - strand, within BWI76_RS03650 at 754.430 kb on - strand, within BWI76_RS03650 at 754.430 kb on - strand, within BWI76_RS03650 at 754.430 kb on - strand, within BWI76_RS03650 at 754.430 kb on - strand, within BWI76_RS03650 at 754.439 kb on + strand, within BWI76_RS03650 at 754.439 kb on + strand, within BWI76_RS03650 at 754.488 kb on - strand, within BWI76_RS03650 at 754.488 kb on - strand, within BWI76_RS03650 at 754.498 kb on - strand, within BWI76_RS03650 at 754.520 kb on + strand, within BWI76_RS03650 at 754.520 kb on + strand, within BWI76_RS03650 at 754.520 kb on + strand, within BWI76_RS03650 at 754.523 kb on - strand, within BWI76_RS03650 at 754.523 kb on - strand, within BWI76_RS03650 at 754.523 kb on - strand, within BWI76_RS03650 at 754.527 kb on + strand, within BWI76_RS03650 at 754.528 kb on - strand, within BWI76_RS03650 at 754.528 kb on - strand, within BWI76_RS03650 at 754.528 kb on - strand, within BWI76_RS03650 at 754.535 kb on - strand, within BWI76_RS03650 at 754.610 kb on + strand, within BWI76_RS03650 at 754.632 kb on - strand, within BWI76_RS03650 at 754.632 kb on - strand, within BWI76_RS03650 at 754.649 kb on - strand, within BWI76_RS03650 at 754.655 kb on - strand, within BWI76_RS03650 at 754.679 kb on + strand, within BWI76_RS03650 at 754.679 kb on + strand, within BWI76_RS03650 at 754.679 kb on + strand, within BWI76_RS03650 at 754.687 kb on - strand, within BWI76_RS03650 at 754.687 kb on - strand, within BWI76_RS03650 at 754.687 kb on - strand, within BWI76_RS03650 at 754.687 kb on - strand, within BWI76_RS03650 at 754.715 kb on - strand at 754.717 kb on + strand at 754.725 kb on - strand at 754.733 kb on - strand at 754.755 kb on - strand, within BWI76_RS03655 at 754.755 kb on - strand, within BWI76_RS03655 at 754.768 kb on + strand, within BWI76_RS03655 at 754.769 kb on + strand, within BWI76_RS03655 at 754.770 kb on - strand, within BWI76_RS03655 at 754.776 kb on - strand, within BWI76_RS03655 at 754.810 kb on - strand, within BWI76_RS03655 at 754.861 kb on + strand, within BWI76_RS03655 at 754.874 kb on - strand, within BWI76_RS03655 at 754.876 kb on - strand, within BWI76_RS03655 at 754.877 kb on + strand, within BWI76_RS03655 at 754.948 kb on + strand at 755.084 kb on - strand, within BWI76_RS03660 at 755.185 kb on + strand, within BWI76_RS03660 at 755.435 kb on - strand, within BWI76_RS03660
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB20 MOI 0.1 remove 753,580 + BWI76_RS03645 0.61 +0.3 753,673 - BWI76_RS03645 0.71 -0.4 753,684 - BWI76_RS03645 0.72 +1.8 753,730 + BWI76_RS03645 0.78 +0.5 753,744 + BWI76_RS03645 0.79 +0.0 753,773 - BWI76_RS03645 0.82 +0.1 753,774 - BWI76_RS03645 0.82 +0.4 753,848 - -0.1 753,848 - -0.1 753,858 - +0.8 753,858 - +0.2 753,866 - +0.4 753,874 - +0.5 753,874 - -0.7 753,874 - -0.0 753,885 + -0.4 753,887 - -0.0 753,887 - -0.2 753,887 - +0.3 753,888 - +1.3 753,891 + +1.6 753,893 - -2.4 753,902 + +0.5 753,903 + -0.1 753,903 + +1.7 753,903 + +0.1 753,903 + -0.1 753,903 + -0.4 753,903 + -0.8 753,910 - -0.6 753,910 - +1.7 753,910 - -1.3 753,910 - +0.1 753,911 - +0.0 753,911 - -0.8 753,911 - +1.2 753,911 - -0.0 753,911 - -1.3 753,911 - +0.1 753,911 - -0.6 753,911 - -0.9 753,911 - -0.9 753,937 + -0.4 753,954 - -0.0 753,956 - -0.7 753,987 + +2.3 754,018 - +0.6 754,093 - -0.6 754,170 + -1.1 754,177 + +0.5 754,177 + +0.6 754,177 + +0.3 754,185 + -1.9 754,198 + +0.4 754,198 + +0.5 754,203 + +1.2 754,211 + +0.2 754,219 - -0.9 754,219 - +1.6 754,243 + +1.1 754,243 + -0.5 754,258 - -0.6 754,261 + +0.0 754,261 + -0.6 754,261 + +1.2 754,261 + +0.3 754,261 + -0.2 754,261 + +0.8 754,261 + -0.1 754,261 + -0.4 754,261 + +0.3 754,261 + -0.2 754,261 + +1.6 754,261 + -0.0 754,261 + +0.2 754,261 + +0.3 754,261 + -0.3 754,261 + +0.5 754,261 + -0.4 754,262 + -1.9 754,262 + -0.0 754,262 - +1.2 754,269 - -0.0 754,269 - +0.9 754,269 - +1.2 754,269 - -0.3 754,269 - +0.4 754,270 - -0.0 754,276 - +0.4 754,288 + +1.2 754,303 + -1.5 754,313 + +0.9 754,320 - -1.2 754,320 - -1.4 754,320 - +1.1 754,333 + +0.5 754,351 + +0.8 754,351 + -0.1 754,351 + +1.3 754,351 + +0.2 754,354 - -1.0 754,354 - +0.7 754,356 + -0.0 754,359 - -0.5 754,359 - -1.6 754,359 - -1.6 754,361 + -2.2 754,361 + +0.2 754,361 + +0.5 754,361 + -1.1 754,364 - -3.0 754,364 - -0.8 754,392 - +0.5 754,394 + +0.0 754,394 + -0.2 754,400 - +1.4 754,402 - +0.3 754,402 - -0.7 754,402 - +0.2 754,402 - -0.8 754,407 - -0.4 754,422 + BWI76_RS03650 0.11 +0.3 754,422 + BWI76_RS03650 0.11 +0.4 754,430 - BWI76_RS03650 0.13 -0.3 754,430 - BWI76_RS03650 0.13 +0.3 754,430 - BWI76_RS03650 0.13 +1.0 754,430 - BWI76_RS03650 0.13 +1.0 754,430 - BWI76_RS03650 0.13 -0.0 754,439 + BWI76_RS03650 0.16 -1.0 754,439 + BWI76_RS03650 0.16 +0.7 754,488 - BWI76_RS03650 0.30 +0.2 754,488 - BWI76_RS03650 0.30 -1.0 754,498 - BWI76_RS03650 0.33 +0.8 754,520 + BWI76_RS03650 0.40 -1.8 754,520 + BWI76_RS03650 0.40 +0.6 754,520 + BWI76_RS03650 0.40 +0.1 754,523 - BWI76_RS03650 0.41 -0.5 754,523 - BWI76_RS03650 0.41 +0.1 754,523 - BWI76_RS03650 0.41 +0.5 754,527 + BWI76_RS03650 0.42 +1.4 754,528 - BWI76_RS03650 0.42 +0.2 754,528 - BWI76_RS03650 0.42 -0.9 754,528 - BWI76_RS03650 0.42 +3.5 754,535 - BWI76_RS03650 0.44 +0.5 754,610 + BWI76_RS03650 0.67 +0.6 754,632 - BWI76_RS03650 0.73 -1.1 754,632 - BWI76_RS03650 0.73 +0.7 754,649 - BWI76_RS03650 0.78 -0.6 754,655 - BWI76_RS03650 0.80 -1.4 754,679 + BWI76_RS03650 0.87 +1.2 754,679 + BWI76_RS03650 0.87 +1.9 754,679 + BWI76_RS03650 0.87 +1.2 754,687 - BWI76_RS03650 0.90 +0.5 754,687 - BWI76_RS03650 0.90 +0.9 754,687 - BWI76_RS03650 0.90 +0.4 754,687 - BWI76_RS03650 0.90 -0.9 754,715 - +0.4 754,717 + -0.4 754,725 - +1.5 754,733 - +0.4 754,755 - BWI76_RS03655 0.17 +0.3 754,755 - BWI76_RS03655 0.17 +1.6 754,768 + BWI76_RS03655 0.24 -0.8 754,769 + BWI76_RS03655 0.24 +0.6 754,770 - BWI76_RS03655 0.25 -1.1 754,776 - BWI76_RS03655 0.28 +0.0 754,810 - BWI76_RS03655 0.45 +2.0 754,861 + BWI76_RS03655 0.70 -0.5 754,874 - BWI76_RS03655 0.77 +0.6 754,876 - BWI76_RS03655 0.78 -0.9 754,877 + BWI76_RS03655 0.78 +0.2 754,948 + -0.1 755,084 - BWI76_RS03660 0.10 +0.2 755,185 + BWI76_RS03660 0.16 +1.3 755,435 - BWI76_RS03660 0.29 +0.4
Or see this region's nucleotide sequence