Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13050

Experiment: KLEB20 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13040 and BWI76_RS13045 are separated by 161 nucleotidesBWI76_RS13045 and BWI76_RS13050 are separated by 148 nucleotidesBWI76_RS13050 and BWI76_RS13055 are separated by 128 nucleotides BWI76_RS13040: BWI76_RS13040 - transcriptional regulator, at 2,721,182 to 2,721,985 _RS13040 BWI76_RS13045: BWI76_RS13045 - hypothetical protein, at 2,722,147 to 2,722,542 _RS13045 BWI76_RS13050: BWI76_RS13050 - transcriptional regulator, at 2,722,691 to 2,723,125 _RS13050 BWI76_RS13055: BWI76_RS13055 - NmrA family protein, at 2,723,254 to 2,724,165 _RS13055 Position (kb) 2722 2723 2724Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2721.696 kb on + strand, within BWI76_RS13040at 2721.718 kb on - strand, within BWI76_RS13040at 2721.776 kb on - strand, within BWI76_RS13040at 2722.076 kb on - strandat 2722.084 kb on + strandat 2722.193 kb on - strand, within BWI76_RS13045at 2722.193 kb on - strand, within BWI76_RS13045at 2722.350 kb on - strand, within BWI76_RS13045at 2722.350 kb on - strand, within BWI76_RS13045at 2722.356 kb on + strand, within BWI76_RS13045at 2722.393 kb on + strand, within BWI76_RS13045at 2722.416 kb on - strand, within BWI76_RS13045at 2722.472 kb on - strand, within BWI76_RS13045at 2722.590 kb on + strandat 2722.672 kb on + strandat 2722.673 kb on + strandat 2722.701 kb on + strandat 2722.920 kb on - strand, within BWI76_RS13050at 2723.196 kb on + strandat 2723.535 kb on - strand, within BWI76_RS13055at 2723.740 kb on + strand, within BWI76_RS13055at 2723.740 kb on + strand, within BWI76_RS13055at 2723.809 kb on + strand, within BWI76_RS13055at 2724.098 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB20 MOI 0.1
remove
2,721,696 + BWI76_RS13040 0.64 -2.4
2,721,718 - BWI76_RS13040 0.67 +0.1
2,721,776 - BWI76_RS13040 0.74 +0.2
2,722,076 - +0.8
2,722,084 + -1.0
2,722,193 - BWI76_RS13045 0.12 -1.2
2,722,193 - BWI76_RS13045 0.12 +0.4
2,722,350 - BWI76_RS13045 0.51 +0.2
2,722,350 - BWI76_RS13045 0.51 +1.5
2,722,356 + BWI76_RS13045 0.53 +0.2
2,722,393 + BWI76_RS13045 0.62 +0.5
2,722,416 - BWI76_RS13045 0.68 +0.8
2,722,472 - BWI76_RS13045 0.82 -3.0
2,722,590 + -1.3
2,722,672 + -1.8
2,722,673 + +2.6
2,722,701 + -2.2
2,722,920 - BWI76_RS13050 0.53 -1.1
2,723,196 + -0.4
2,723,535 - BWI76_RS13055 0.31 -0.9
2,723,740 + BWI76_RS13055 0.53 +0.2
2,723,740 + BWI76_RS13055 0.53 -0.5
2,723,809 + BWI76_RS13055 0.61 +0.3
2,724,098 - -1.2

Or see this region's nucleotide sequence