Experiment: KLEB20 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05875 and BWI76_RS05880 are separated by 7 nucleotides BWI76_RS05880 and BWI76_RS05885 are separated by 100 nucleotides BWI76_RS05885 and BWI76_RS05890 are separated by 214 nucleotides
BWI76_RS05875: BWI76_RS05875 - hypothetical protein, at 1,234,394 to 1,236,181
_RS05875
BWI76_RS05880: BWI76_RS05880 - AraC-type DNA-binding domain-containing protein, at 1,236,189 to 1,236,986
_RS05880
BWI76_RS05885: BWI76_RS05885 - anion permease, at 1,237,087 to 1,237,896
_RS05885
BWI76_RS05890: BWI76_RS05890 - haloacid dehalogenase, at 1,238,111 to 1,238,773
_RS05890
Position (kb) 1237
1238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1236.204 kb on - strand at 1236.252 kb on + strand at 1236.300 kb on + strand, within BWI76_RS05880 at 1236.430 kb on - strand, within BWI76_RS05880 at 1236.989 kb on + strand at 1236.989 kb on + strand at 1236.989 kb on + strand at 1237.174 kb on - strand, within BWI76_RS05885 at 1237.282 kb on - strand, within BWI76_RS05885 at 1237.538 kb on + strand, within BWI76_RS05885 at 1237.680 kb on + strand, within BWI76_RS05885 at 1237.883 kb on - strand at 1238.123 kb on - strand at 1238.192 kb on - strand, within BWI76_RS05890 at 1238.192 kb on - strand, within BWI76_RS05890 at 1238.192 kb on - strand, within BWI76_RS05890 at 1238.311 kb on + strand, within BWI76_RS05890 at 1238.511 kb on + strand, within BWI76_RS05890 at 1238.568 kb on + strand, within BWI76_RS05890 at 1238.592 kb on + strand, within BWI76_RS05890 at 1238.706 kb on + strand, within BWI76_RS05890 at 1238.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB20 MOI 0.1 remove 1,236,204 - -0.2 1,236,252 + +0.1 1,236,300 + BWI76_RS05880 0.14 -2.0 1,236,430 - BWI76_RS05880 0.30 -0.0 1,236,989 + -1.3 1,236,989 + +0.4 1,236,989 + +0.1 1,237,174 - BWI76_RS05885 0.11 -1.6 1,237,282 - BWI76_RS05885 0.24 -3.8 1,237,538 + BWI76_RS05885 0.56 -0.1 1,237,680 + BWI76_RS05885 0.73 -1.6 1,237,883 - +0.9 1,238,123 - -2.6 1,238,192 - BWI76_RS05890 0.12 -1.3 1,238,192 - BWI76_RS05890 0.12 -0.5 1,238,192 - BWI76_RS05890 0.12 +0.2 1,238,311 + BWI76_RS05890 0.30 +0.0 1,238,511 + BWI76_RS05890 0.60 -0.7 1,238,568 + BWI76_RS05890 0.69 +1.4 1,238,592 + BWI76_RS05890 0.73 +0.0 1,238,706 + BWI76_RS05890 0.90 +0.1 1,238,843 - -0.2
Or see this region's nucleotide sequence