Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19460

Experiment: KLEB20 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19455 and BWI76_RS19460 are separated by 12 nucleotidesBWI76_RS19460 and BWI76_RS19465 are separated by 110 nucleotidesBWI76_RS19465 and BWI76_RS19470 are separated by 53 nucleotides BWI76_RS19455: BWI76_RS19455 - hypothetical protein, at 4,065,632 to 4,067,638 _RS19455 BWI76_RS19460: BWI76_RS19460 - lipoprotein, at 4,067,651 to 4,068,112 _RS19460 BWI76_RS19465: BWI76_RS19465 - hypothetical protein, at 4,068,223 to 4,068,690 _RS19465 BWI76_RS19470: BWI76_RS19470 - DNA-binding response regulator, at 4,068,744 to 4,069,463 _RS19470 Position (kb) 4067 4068 4069Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4066.931 kb on - strand, within BWI76_RS19455at 4067.141 kb on + strand, within BWI76_RS19455at 4067.168 kb on + strand, within BWI76_RS19455at 4067.226 kb on - strand, within BWI76_RS19455at 4067.320 kb on + strand, within BWI76_RS19455at 4067.431 kb on + strand, within BWI76_RS19455at 4067.613 kb on - strandat 4067.766 kb on - strand, within BWI76_RS19460at 4067.785 kb on - strand, within BWI76_RS19460at 4067.824 kb on + strand, within BWI76_RS19460at 4067.911 kb on - strand, within BWI76_RS19460at 4068.120 kb on - strandat 4068.441 kb on - strand, within BWI76_RS19465at 4068.528 kb on + strand, within BWI76_RS19465at 4068.530 kb on - strand, within BWI76_RS19465at 4068.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB20 MOI 1
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4,066,931 - BWI76_RS19455 0.65 +0.7
4,067,141 + BWI76_RS19455 0.75 +0.2
4,067,168 + BWI76_RS19455 0.77 +1.1
4,067,226 - BWI76_RS19455 0.79 +0.1
4,067,320 + BWI76_RS19455 0.84 +0.7
4,067,431 + BWI76_RS19455 0.90 -1.0
4,067,613 - -0.3
4,067,766 - BWI76_RS19460 0.25 -1.9
4,067,785 - BWI76_RS19460 0.29 -1.3
4,067,824 + BWI76_RS19460 0.37 -1.7
4,067,911 - BWI76_RS19460 0.56 -0.0
4,068,120 - -3.5
4,068,441 - BWI76_RS19465 0.47 +0.7
4,068,528 + BWI76_RS19465 0.65 +2.8
4,068,530 - BWI76_RS19465 0.66 -0.3
4,068,653 + +1.1

Or see this region's nucleotide sequence