Experiment: KLEB20 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19305 and BWI76_RS19310 overlap by 29 nucleotides BWI76_RS19310 and BWI76_RS19315 overlap by 4 nucleotides BWI76_RS19315 and BWI76_RS19320 overlap by 4 nucleotides
BWI76_RS19305: BWI76_RS19305 - ABC transporter ATP-binding protein, at 4,021,466 to 4,022,329
_RS19305
BWI76_RS19310: BWI76_RS19310 - ABC transporter permease, at 4,022,301 to 4,023,206
_RS19310
BWI76_RS19315: BWI76_RS19315 - ABC transporter permease, at 4,023,203 to 4,024,240
_RS19315
BWI76_RS19320: BWI76_RS19320 - putative ABC transport system periplasmic binding protein, at 4,024,237 to 4,025,859
_RS19320
Position (kb) 4023
4024
4025 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4022.241 kb on - strand, within BWI76_RS19305 at 4022.298 kb on + strand at 4022.546 kb on - strand, within BWI76_RS19310 at 4022.644 kb on - strand, within BWI76_RS19310 at 4023.369 kb on + strand, within BWI76_RS19315 at 4023.410 kb on - strand, within BWI76_RS19315 at 4023.486 kb on + strand, within BWI76_RS19315 at 4023.579 kb on - strand, within BWI76_RS19315 at 4023.784 kb on + strand, within BWI76_RS19315 at 4023.872 kb on + strand, within BWI76_RS19315 at 4024.108 kb on - strand, within BWI76_RS19315 at 4024.165 kb on + strand at 4024.165 kb on + strand at 4024.165 kb on + strand at 4024.225 kb on + strand at 4024.400 kb on - strand, within BWI76_RS19320 at 4024.404 kb on + strand, within BWI76_RS19320 at 4024.504 kb on - strand, within BWI76_RS19320
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB20 MOI 1 remove 4,022,241 - BWI76_RS19305 0.90 -0.1 4,022,298 + -2.1 4,022,546 - BWI76_RS19310 0.27 -1.3 4,022,644 - BWI76_RS19310 0.38 -1.0 4,023,369 + BWI76_RS19315 0.16 +0.5 4,023,410 - BWI76_RS19315 0.20 +0.3 4,023,486 + BWI76_RS19315 0.27 -0.3 4,023,579 - BWI76_RS19315 0.36 -2.4 4,023,784 + BWI76_RS19315 0.56 -1.3 4,023,872 + BWI76_RS19315 0.64 -1.5 4,024,108 - BWI76_RS19315 0.87 -2.7 4,024,165 + +0.3 4,024,165 + +0.6 4,024,165 + +2.8 4,024,225 + +0.6 4,024,400 - BWI76_RS19320 0.10 -0.2 4,024,404 + BWI76_RS19320 0.10 -2.2 4,024,504 - BWI76_RS19320 0.16 -0.8
Or see this region's nucleotide sequence