Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19310

Experiment: KLEB20 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19300 and BWI76_RS19305 are separated by 10 nucleotidesBWI76_RS19305 and BWI76_RS19310 overlap by 29 nucleotidesBWI76_RS19310 and BWI76_RS19315 overlap by 4 nucleotides BWI76_RS19300: BWI76_RS19300 - ABC transporter ATP-binding protein, at 4,020,682 to 4,021,455 _RS19300 BWI76_RS19305: BWI76_RS19305 - ABC transporter ATP-binding protein, at 4,021,466 to 4,022,329 _RS19305 BWI76_RS19310: BWI76_RS19310 - ABC transporter permease, at 4,022,301 to 4,023,206 _RS19310 BWI76_RS19315: BWI76_RS19315 - ABC transporter permease, at 4,023,203 to 4,024,240 _RS19315 Position (kb) 4022 4023 4024Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4021.917 kb on + strand, within BWI76_RS19305at 4021.948 kb on + strand, within BWI76_RS19305at 4022.054 kb on + strand, within BWI76_RS19305at 4022.157 kb on + strand, within BWI76_RS19305at 4022.241 kb on - strand, within BWI76_RS19305at 4022.298 kb on + strandat 4022.546 kb on - strand, within BWI76_RS19310at 4022.644 kb on - strand, within BWI76_RS19310at 4023.369 kb on + strand, within BWI76_RS19315at 4023.410 kb on - strand, within BWI76_RS19315at 4023.486 kb on + strand, within BWI76_RS19315at 4023.579 kb on - strand, within BWI76_RS19315at 4023.784 kb on + strand, within BWI76_RS19315at 4023.872 kb on + strand, within BWI76_RS19315at 4024.108 kb on - strand, within BWI76_RS19315at 4024.165 kb on + strandat 4024.165 kb on + strandat 4024.165 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB20 MOI 1
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4,021,917 + BWI76_RS19305 0.52 +0.1
4,021,948 + BWI76_RS19305 0.56 -0.2
4,022,054 + BWI76_RS19305 0.68 -0.2
4,022,157 + BWI76_RS19305 0.80 -2.1
4,022,241 - BWI76_RS19305 0.90 -0.1
4,022,298 + -2.1
4,022,546 - BWI76_RS19310 0.27 -1.3
4,022,644 - BWI76_RS19310 0.38 -1.0
4,023,369 + BWI76_RS19315 0.16 +0.5
4,023,410 - BWI76_RS19315 0.20 +0.3
4,023,486 + BWI76_RS19315 0.27 -0.3
4,023,579 - BWI76_RS19315 0.36 -2.4
4,023,784 + BWI76_RS19315 0.56 -1.3
4,023,872 + BWI76_RS19315 0.64 -1.5
4,024,108 - BWI76_RS19315 0.87 -2.7
4,024,165 + +0.3
4,024,165 + +0.6
4,024,165 + +2.8

Or see this region's nucleotide sequence