Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19210

Experiment: KLEB20 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19205 and BWI76_RS19210 are separated by 201 nucleotidesBWI76_RS19210 and BWI76_RS19215 are separated by 84 nucleotides BWI76_RS19205: BWI76_RS19205 - putative proline iminopeptidase, at 3,997,241 to 3,998,140 _RS19205 BWI76_RS19210: BWI76_RS19210 - LuxR family transcriptional regulator, at 3,998,342 to 3,999,094 _RS19210 BWI76_RS19215: BWI76_RS19215 - proline-specific peptidase, at 3,999,179 to 4,000,111 _RS19215 BWI76_RS19220: BWI76_RS19220 - hypothetical protein, at 4,000,083 to 4,001,201 _RS19220 Position (kb) 3998 3999 4000Strain fitness (log2 ratio) -2 -1 0 1at 3997.807 kb on + strand, within BWI76_RS19205at 3997.906 kb on + strand, within BWI76_RS19205at 3997.948 kb on + strand, within BWI76_RS19205at 3998.075 kb on + strandat 3998.542 kb on + strand, within BWI76_RS19210at 3998.740 kb on + strand, within BWI76_RS19210at 3998.879 kb on + strand, within BWI76_RS19210at 3999.134 kb on + strandat 3999.570 kb on - strand, within BWI76_RS19215

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB20 MOI 1
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3,997,807 + BWI76_RS19205 0.63 -1.8
3,997,906 + BWI76_RS19205 0.74 -2.0
3,997,948 + BWI76_RS19205 0.79 -1.2
3,998,075 + +0.8
3,998,542 + BWI76_RS19210 0.27 +0.7
3,998,740 + BWI76_RS19210 0.53 +0.4
3,998,879 + BWI76_RS19210 0.71 -0.8
3,999,134 + -2.0
3,999,570 - BWI76_RS19215 0.42 -0.5

Or see this region's nucleotide sequence