Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15335

Experiment: KLEB20 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15330 and BWI76_RS15335 overlap by 1 nucleotidesBWI76_RS15335 and BWI76_RS15340 are separated by 84 nucleotides BWI76_RS15330: BWI76_RS15330 - urea ABC transporter permease subunit UrtC, at 3,209,844 to 3,210,917 _RS15330 BWI76_RS15335: BWI76_RS15335 - branched-chain amino acid ABC transporter permease, at 3,210,917 to 3,212,491 _RS15335 BWI76_RS15340: BWI76_RS15340 - urea ABC transporter substrate-binding protein, at 3,212,576 to 3,213,847 _RS15340 Position (kb) 3210 3211 3212 3213Strain fitness (log2 ratio) -3 -2 -1 0 1at 3209.976 kb on + strand, within BWI76_RS15330at 3209.976 kb on + strand, within BWI76_RS15330at 3209.979 kb on - strand, within BWI76_RS15330at 3210.145 kb on + strand, within BWI76_RS15330at 3210.155 kb on + strand, within BWI76_RS15330at 3210.155 kb on + strandat 3210.415 kb on + strand, within BWI76_RS15330at 3210.925 kb on - strandat 3211.111 kb on + strandat 3211.144 kb on + strand, within BWI76_RS15335at 3211.850 kb on + strand, within BWI76_RS15335at 3211.885 kb on - strand, within BWI76_RS15335at 3212.101 kb on + strand, within BWI76_RS15335at 3212.534 kb on + strandat 3212.758 kb on + strand, within BWI76_RS15340at 3213.004 kb on - strand, within BWI76_RS15340at 3213.110 kb on - strand, within BWI76_RS15340at 3213.476 kb on - strand, within BWI76_RS15340at 3213.488 kb on - strand, within BWI76_RS15340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB20 MOI 1
remove
3,209,976 + BWI76_RS15330 0.12 +0.9
3,209,976 + BWI76_RS15330 0.12 +0.4
3,209,979 - BWI76_RS15330 0.13 +0.3
3,210,145 + BWI76_RS15330 0.28 +1.2
3,210,155 + BWI76_RS15330 0.29 +0.6
3,210,155 + +0.8
3,210,415 + BWI76_RS15330 0.53 -2.8
3,210,925 - -0.9
3,211,111 + -0.7
3,211,144 + BWI76_RS15335 0.14 +1.0
3,211,850 + BWI76_RS15335 0.59 +0.5
3,211,885 - BWI76_RS15335 0.61 +0.4
3,212,101 + BWI76_RS15335 0.75 +1.1
3,212,534 + +1.6
3,212,758 + BWI76_RS15340 0.14 +0.1
3,213,004 - BWI76_RS15340 0.34 -0.8
3,213,110 - BWI76_RS15340 0.42 +0.2
3,213,476 - BWI76_RS15340 0.71 +1.2
3,213,488 - BWI76_RS15340 0.72 -0.1

Or see this region's nucleotide sequence