Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07805

Experiment: KLEB20 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07800 and BWI76_RS07805 overlap by 4 nucleotidesBWI76_RS07805 and BWI76_RS07810 are separated by 20 nucleotides BWI76_RS07800: BWI76_RS07800 - ABC transporter, at 1,652,996 to 1,654,498 _RS07800 BWI76_RS07805: BWI76_RS07805 - sugar ABC transporter permease, at 1,654,495 to 1,655,493 _RS07805 BWI76_RS07810: BWI76_RS07810 - sugar ABC transporter periplasmic sugar-binding protein, at 1,655,514 to 1,656,578 _RS07810 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1653.573 kb on - strand, within BWI76_RS07800at 1653.717 kb on + strand, within BWI76_RS07800at 1653.725 kb on - strand, within BWI76_RS07800at 1653.762 kb on + strand, within BWI76_RS07800at 1653.762 kb on + strand, within BWI76_RS07800at 1653.770 kb on - strand, within BWI76_RS07800at 1653.943 kb on - strand, within BWI76_RS07800at 1654.821 kb on - strand, within BWI76_RS07805at 1654.838 kb on - strand, within BWI76_RS07805at 1655.123 kb on - strand, within BWI76_RS07805at 1655.560 kb on - strandat 1655.888 kb on - strand, within BWI76_RS07810at 1655.888 kb on - strand, within BWI76_RS07810at 1655.956 kb on - strand, within BWI76_RS07810at 1656.128 kb on + strand, within BWI76_RS07810at 1656.194 kb on + strand, within BWI76_RS07810at 1656.219 kb on - strand, within BWI76_RS07810at 1656.337 kb on + strand, within BWI76_RS07810

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB20 MOI 1
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1,653,573 - BWI76_RS07800 0.38 -0.2
1,653,717 + BWI76_RS07800 0.48 -1.7
1,653,725 - BWI76_RS07800 0.49 +1.0
1,653,762 + BWI76_RS07800 0.51 -0.1
1,653,762 + BWI76_RS07800 0.51 +0.6
1,653,770 - BWI76_RS07800 0.51 +1.0
1,653,943 - BWI76_RS07800 0.63 +1.4
1,654,821 - BWI76_RS07805 0.33 -4.5
1,654,838 - BWI76_RS07805 0.34 -1.1
1,655,123 - BWI76_RS07805 0.63 -0.0
1,655,560 - -0.2
1,655,888 - BWI76_RS07810 0.35 +0.1
1,655,888 - BWI76_RS07810 0.35 +0.6
1,655,956 - BWI76_RS07810 0.42 -3.8
1,656,128 + BWI76_RS07810 0.58 +0.6
1,656,194 + BWI76_RS07810 0.64 +0.2
1,656,219 - BWI76_RS07810 0.66 -0.7
1,656,337 + BWI76_RS07810 0.77 -1.4

Or see this region's nucleotide sequence