Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07510

Experiment: KLEB20 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07505 and BWI76_RS07510 are separated by 173 nucleotidesBWI76_RS07510 and BWI76_RS07515 are separated by 52 nucleotides BWI76_RS07505: BWI76_RS07505 - hydrophobe/amphiphile efflux-1 family RND transporter, at 1,585,689 to 1,588,781 _RS07505 BWI76_RS07510: BWI76_RS07510 - hypothetical protein, at 1,588,955 to 1,589,674 _RS07510 BWI76_RS07515: BWI76_RS07515 - glutamate--cysteine ligase, at 1,589,727 to 1,590,842 _RS07515 Position (kb) 1588 1589 1590Strain fitness (log2 ratio) -2 -1 0 1at 1587.998 kb on + strand, within BWI76_RS07505at 1588.348 kb on - strand, within BWI76_RS07505at 1588.360 kb on + strand, within BWI76_RS07505at 1588.400 kb on + strand, within BWI76_RS07505at 1588.419 kb on + strand, within BWI76_RS07505at 1588.639 kb on + strandat 1588.679 kb on + strandat 1588.687 kb on - strandat 1588.804 kb on - strandat 1588.880 kb on + strandat 1589.081 kb on - strand, within BWI76_RS07510at 1589.166 kb on + strand, within BWI76_RS07510at 1589.166 kb on + strand, within BWI76_RS07510at 1589.233 kb on + strand, within BWI76_RS07510at 1589.691 kb on + strandat 1589.716 kb on - strandat 1589.732 kb on - strandat 1589.846 kb on + strand, within BWI76_RS07515at 1589.991 kb on - strand, within BWI76_RS07515at 1590.009 kb on - strand, within BWI76_RS07515at 1590.213 kb on - strand, within BWI76_RS07515at 1590.588 kb on + strand, within BWI76_RS07515

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB20 MOI 1
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1,587,998 + BWI76_RS07505 0.75 -1.1
1,588,348 - BWI76_RS07505 0.86 -2.2
1,588,360 + BWI76_RS07505 0.86 +0.5
1,588,400 + BWI76_RS07505 0.88 +0.5
1,588,419 + BWI76_RS07505 0.88 -0.7
1,588,639 + +0.6
1,588,679 + -1.0
1,588,687 - +0.2
1,588,804 - -0.7
1,588,880 + +0.0
1,589,081 - BWI76_RS07510 0.17 -1.6
1,589,166 + BWI76_RS07510 0.29 -1.7
1,589,166 + BWI76_RS07510 0.29 -1.5
1,589,233 + BWI76_RS07510 0.39 -0.8
1,589,691 + -1.0
1,589,716 - -0.1
1,589,732 - +0.1
1,589,846 + BWI76_RS07515 0.11 -0.7
1,589,991 - BWI76_RS07515 0.24 -0.9
1,590,009 - BWI76_RS07515 0.25 -0.4
1,590,213 - BWI76_RS07515 0.44 +0.2
1,590,588 + BWI76_RS07515 0.77 -0.2

Or see this region's nucleotide sequence