Experiment: KLEB20 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04265 and BWI76_RS04270 are separated by 203 nucleotides BWI76_RS04270 and BWI76_RS04275 are separated by 99 nucleotides BWI76_RS04275 and BWI76_RS04280 are separated by 120 nucleotides
BWI76_RS04265: BWI76_RS04265 - sodium:alanine symporter family protein, at 878,105 to 879,535
_RS04265
BWI76_RS04270: BWI76_RS04270 - transaldolase, at 879,739 to 880,692
_RS04270
BWI76_RS04275: BWI76_RS04275 - molybdopterin adenylyltransferase, at 880,792 to 881,379
_RS04275
BWI76_RS04280: BWI76_RS04280 - MFS transporter, at 881,500 to 882,810
_RS04280
Position (kb) 879
880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 878.876 kb on - strand, within BWI76_RS04265 at 878.897 kb on - strand, within BWI76_RS04265 at 878.977 kb on - strand, within BWI76_RS04265 at 879.037 kb on - strand, within BWI76_RS04265 at 879.114 kb on - strand, within BWI76_RS04265 at 879.186 kb on + strand, within BWI76_RS04265 at 879.194 kb on - strand, within BWI76_RS04265 at 879.194 kb on - strand, within BWI76_RS04265 at 879.254 kb on + strand, within BWI76_RS04265 at 879.292 kb on + strand, within BWI76_RS04265 at 879.342 kb on - strand, within BWI76_RS04265 at 879.508 kb on - strand at 879.776 kb on - strand at 879.873 kb on - strand, within BWI76_RS04270 at 880.036 kb on + strand, within BWI76_RS04270 at 880.041 kb on + strand, within BWI76_RS04270 at 880.202 kb on - strand, within BWI76_RS04270 at 880.446 kb on + strand, within BWI76_RS04270 at 880.516 kb on - strand, within BWI76_RS04270 at 880.517 kb on + strand, within BWI76_RS04270 at 880.729 kb on - strand at 880.729 kb on - strand at 880.735 kb on + strand at 880.854 kb on + strand, within BWI76_RS04275 at 880.862 kb on - strand at 880.890 kb on - strand, within BWI76_RS04275 at 880.899 kb on + strand, within BWI76_RS04275 at 880.899 kb on + strand, within BWI76_RS04275 at 880.944 kb on + strand, within BWI76_RS04275 at 880.944 kb on + strand, within BWI76_RS04275 at 881.101 kb on + strand, within BWI76_RS04275 at 881.177 kb on + strand, within BWI76_RS04275 at 881.177 kb on + strand, within BWI76_RS04275 at 881.185 kb on - strand, within BWI76_RS04275 at 881.215 kb on + strand, within BWI76_RS04275 at 881.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB20 MOI 1 remove 878,876 - BWI76_RS04265 0.54 -1.1 878,897 - BWI76_RS04265 0.55 -0.7 878,977 - BWI76_RS04265 0.61 +0.5 879,037 - BWI76_RS04265 0.65 -0.3 879,114 - BWI76_RS04265 0.71 +0.7 879,186 + BWI76_RS04265 0.76 -0.3 879,194 - BWI76_RS04265 0.76 -1.4 879,194 - BWI76_RS04265 0.76 -2.1 879,254 + BWI76_RS04265 0.80 +1.4 879,292 + BWI76_RS04265 0.83 -0.5 879,342 - BWI76_RS04265 0.86 -1.7 879,508 - -1.7 879,776 - -2.3 879,873 - BWI76_RS04270 0.14 -4.0 880,036 + BWI76_RS04270 0.31 +0.5 880,041 + BWI76_RS04270 0.32 +1.8 880,202 - BWI76_RS04270 0.49 -2.2 880,446 + BWI76_RS04270 0.74 -0.3 880,516 - BWI76_RS04270 0.81 -2.3 880,517 + BWI76_RS04270 0.82 -2.5 880,729 - +0.1 880,729 - -0.1 880,735 + +1.1 880,854 + BWI76_RS04275 0.11 -3.4 880,862 - +1.8 880,890 - BWI76_RS04275 0.17 +0.7 880,899 + BWI76_RS04275 0.18 -3.2 880,899 + BWI76_RS04275 0.18 -2.4 880,944 + BWI76_RS04275 0.26 -0.7 880,944 + BWI76_RS04275 0.26 +0.8 881,101 + BWI76_RS04275 0.53 -0.7 881,177 + BWI76_RS04275 0.65 -1.2 881,177 + BWI76_RS04275 0.65 -1.1 881,185 - BWI76_RS04275 0.67 -1.1 881,215 + BWI76_RS04275 0.72 -0.4 881,508 - -1.7
Or see this region's nucleotide sequence