Experiment: KLEB20 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03775 and BWI76_RS03780 are separated by 89 nucleotides BWI76_RS03780 and BWI76_RS03785 are separated by 46 nucleotides BWI76_RS03785 and BWI76_RS03790 are separated by 82 nucleotides BWI76_RS03790 and BWI76_RS03795 are separated by 178 nucleotides
BWI76_RS03775: BWI76_RS03775 - ricin B lectin, at 782,257 to 782,691
_RS03775
BWI76_RS03780: BWI76_RS03780 - threonine transporter RhtB, at 782,781 to 783,422
_RS03780
BWI76_RS03785: BWI76_RS03785 - AraC family transcriptional regulator, at 783,469 to 784,284
_RS03785
BWI76_RS03790: BWI76_RS03790 - hypothetical protein, at 784,367 to 784,822
_RS03790
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
Position (kb) 783
784
785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 782.482 kb on - strand, within BWI76_RS03775 at 782.485 kb on + strand, within BWI76_RS03775 at 782.489 kb on - strand, within BWI76_RS03775 at 782.490 kb on + strand, within BWI76_RS03775 at 782.490 kb on + strand, within BWI76_RS03775 at 782.498 kb on - strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.563 kb on + strand, within BWI76_RS03775 at 782.563 kb on + strand, within BWI76_RS03775 at 782.566 kb on - strand, within BWI76_RS03775 at 782.571 kb on + strand, within BWI76_RS03775 at 782.571 kb on - strand, within BWI76_RS03775 at 782.573 kb on + strand at 782.573 kb on + strand, within BWI76_RS03775 at 782.573 kb on + strand, within BWI76_RS03775 at 782.580 kb on + strand, within BWI76_RS03775 at 782.580 kb on + strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.582 kb on - strand, within BWI76_RS03775 at 782.585 kb on + strand, within BWI76_RS03775 at 782.590 kb on + strand, within BWI76_RS03775 at 782.590 kb on + strand, within BWI76_RS03775 at 782.611 kb on - strand, within BWI76_RS03775 at 782.611 kb on - strand, within BWI76_RS03775 at 782.627 kb on + strand, within BWI76_RS03775 at 782.635 kb on - strand, within BWI76_RS03775 at 782.635 kb on - strand, within BWI76_RS03775 at 782.643 kb on + strand, within BWI76_RS03775 at 782.645 kb on + strand, within BWI76_RS03775 at 782.651 kb on - strand at 782.651 kb on - strand at 782.660 kb on + strand at 782.732 kb on + strand at 782.742 kb on + strand at 782.751 kb on + strand at 782.751 kb on + strand at 782.751 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.754 kb on - strand at 782.757 kb on + strand at 782.759 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.788 kb on + strand at 782.801 kb on + strand at 782.821 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.840 kb on - strand at 782.840 kb on - strand at 782.840 kb on - strand at 782.841 kb on - strand at 782.847 kb on - strand, within BWI76_RS03780 at 782.852 kb on - strand, within BWI76_RS03780 at 782.856 kb on + strand, within BWI76_RS03780 at 782.857 kb on - strand, within BWI76_RS03780 at 782.862 kb on - strand, within BWI76_RS03780 at 782.877 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.884 kb on + strand, within BWI76_RS03780 at 782.884 kb on + strand, within BWI76_RS03780 at 782.885 kb on - strand, within BWI76_RS03780 at 782.889 kb on + strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.893 kb on + strand, within BWI76_RS03780 at 782.902 kb on + strand, within BWI76_RS03780 at 782.910 kb on + strand, within BWI76_RS03780 at 782.920 kb on + strand, within BWI76_RS03780 at 782.928 kb on - strand, within BWI76_RS03780 at 782.974 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.108 kb on - strand, within BWI76_RS03780 at 783.108 kb on - strand, within BWI76_RS03780 at 783.177 kb on - strand, within BWI76_RS03780 at 783.271 kb on + strand, within BWI76_RS03780 at 783.299 kb on + strand, within BWI76_RS03780 at 783.313 kb on + strand, within BWI76_RS03780 at 783.321 kb on - strand, within BWI76_RS03780 at 783.346 kb on + strand, within BWI76_RS03780 at 783.346 kb on + strand, within BWI76_RS03780 at 783.351 kb on + strand, within BWI76_RS03780 at 783.396 kb on + strand at 783.411 kb on + strand at 783.440 kb on + strand at 783.441 kb on - strand at 783.444 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.452 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.546 kb on - strand at 783.658 kb on - strand, within BWI76_RS03785 at 783.701 kb on + strand, within BWI76_RS03785 at 783.709 kb on - strand, within BWI76_RS03785 at 783.711 kb on + strand, within BWI76_RS03785 at 783.929 kb on - strand, within BWI76_RS03785 at 784.028 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.057 kb on + strand, within BWI76_RS03785 at 784.058 kb on - strand, within BWI76_RS03785 at 784.065 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.212 kb on - strand at 784.301 kb on - strand at 784.301 kb on - strand at 784.334 kb on - strand at 784.427 kb on - strand, within BWI76_RS03790 at 784.457 kb on + strand, within BWI76_RS03790 at 784.504 kb on + strand, within BWI76_RS03790 at 784.512 kb on - strand, within BWI76_RS03790 at 784.692 kb on + strand, within BWI76_RS03790 at 784.725 kb on + strand, within BWI76_RS03790 at 784.939 kb on + strand at 784.959 kb on + strand at 784.997 kb on + strand at 785.090 kb on - strand at 785.151 kb on + strand, within BWI76_RS03795 at 785.159 kb on - strand, within BWI76_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB20 MOI 1 remove 782,482 - BWI76_RS03775 0.52 +0.1 782,485 + BWI76_RS03775 0.52 -0.0 782,489 - BWI76_RS03775 0.53 -0.2 782,490 + BWI76_RS03775 0.54 -1.7 782,490 + BWI76_RS03775 0.54 -0.1 782,498 - BWI76_RS03775 0.55 -0.6 782,512 + BWI76_RS03775 0.59 -1.2 782,512 + BWI76_RS03775 0.59 -2.4 782,512 + BWI76_RS03775 0.59 +0.8 782,512 + BWI76_RS03775 0.59 +0.8 782,512 + BWI76_RS03775 0.59 +1.3 782,512 + BWI76_RS03775 0.59 -0.5 782,512 + BWI76_RS03775 0.59 -2.7 782,512 + BWI76_RS03775 0.59 -1.7 782,512 + BWI76_RS03775 0.59 -0.6 782,512 + BWI76_RS03775 0.59 -0.6 782,512 + BWI76_RS03775 0.59 -2.6 782,512 + BWI76_RS03775 0.59 -1.1 782,512 + BWI76_RS03775 0.59 -0.1 782,520 - BWI76_RS03775 0.60 +0.8 782,520 - BWI76_RS03775 0.60 -0.0 782,520 - BWI76_RS03775 0.60 -1.0 782,520 - BWI76_RS03775 0.60 -1.0 782,520 - BWI76_RS03775 0.60 -0.2 782,520 - BWI76_RS03775 0.60 -0.5 782,520 - BWI76_RS03775 0.60 +1.8 782,520 - BWI76_RS03775 0.60 +1.1 782,520 - BWI76_RS03775 0.60 -1.9 782,563 + BWI76_RS03775 0.70 -1.5 782,563 + BWI76_RS03775 0.70 -0.2 782,566 - BWI76_RS03775 0.71 -0.6 782,571 + BWI76_RS03775 0.72 +0.4 782,571 - BWI76_RS03775 0.72 -0.7 782,573 + +0.2 782,573 + BWI76_RS03775 0.73 -3.3 782,573 + BWI76_RS03775 0.73 -1.2 782,580 + BWI76_RS03775 0.74 -0.8 782,580 + BWI76_RS03775 0.74 +1.1 782,581 - BWI76_RS03775 0.74 -1.4 782,581 - BWI76_RS03775 0.74 +0.8 782,581 - BWI76_RS03775 0.74 -2.8 782,582 - BWI76_RS03775 0.75 +0.2 782,585 + BWI76_RS03775 0.75 -0.8 782,590 + BWI76_RS03775 0.77 -3.5 782,590 + BWI76_RS03775 0.77 -0.4 782,611 - BWI76_RS03775 0.81 -0.6 782,611 - BWI76_RS03775 0.81 -3.8 782,627 + BWI76_RS03775 0.85 -0.9 782,635 - BWI76_RS03775 0.87 -0.2 782,635 - BWI76_RS03775 0.87 -1.3 782,643 + BWI76_RS03775 0.89 -3.5 782,645 + BWI76_RS03775 0.89 -0.9 782,651 - -2.0 782,651 - +0.4 782,660 + -1.9 782,732 + +3.3 782,742 + +0.5 782,751 + -1.1 782,751 + -1.8 782,751 + +1.0 782,752 + +1.9 782,752 + -2.5 782,752 + +0.5 782,752 + -0.9 782,752 + -0.3 782,752 + -2.6 782,752 + +0.4 782,752 + -0.3 782,752 + -1.0 782,752 + -2.8 782,752 + +0.0 782,752 + +0.3 782,752 + +1.0 782,752 + +0.5 782,752 + -2.1 782,752 + -1.2 782,752 + +0.1 782,752 + +1.5 782,752 + +0.2 782,754 - +0.9 782,757 + +0.6 782,759 - +1.2 782,760 - -0.6 782,760 - +0.5 782,760 - -1.0 782,760 - -0.5 782,760 - -0.1 782,760 - -1.4 782,760 - +0.9 782,760 - -0.7 782,760 - -2.4 782,760 - +0.4 782,760 - +0.6 782,788 + -0.6 782,801 + -1.2 782,821 + -0.2 782,828 + +0.1 782,828 + -3.1 782,828 + +0.6 782,828 + +0.4 782,828 + -0.2 782,828 + -1.3 782,828 + +0.1 782,828 + -0.1 782,828 + -0.7 782,828 + -0.7 782,832 + +1.2 782,832 + +1.9 782,832 + -1.7 782,832 + -1.1 782,836 - +0.1 782,836 - -0.1 782,836 - -0.2 782,836 - -0.6 782,836 - +1.7 782,836 - -0.7 782,836 - -1.2 782,836 - +0.2 782,836 - -0.8 782,836 - -0.4 782,836 - -1.7 782,836 - +1.5 782,840 - -2.0 782,840 - -1.3 782,840 - +0.5 782,841 - +1.2 782,847 - BWI76_RS03780 0.10 -1.3 782,852 - BWI76_RS03780 0.11 -0.2 782,856 + BWI76_RS03780 0.12 -2.3 782,857 - BWI76_RS03780 0.12 +0.2 782,862 - BWI76_RS03780 0.13 -1.6 782,877 + BWI76_RS03780 0.15 -0.4 782,882 + BWI76_RS03780 0.16 +0.1 782,882 + BWI76_RS03780 0.16 +0.1 782,882 + BWI76_RS03780 0.16 -1.2 782,884 + BWI76_RS03780 0.16 -1.4 782,884 + BWI76_RS03780 0.16 +0.8 782,885 - BWI76_RS03780 0.16 +1.3 782,889 + BWI76_RS03780 0.17 +1.8 782,892 - BWI76_RS03780 0.17 +0.4 782,892 - BWI76_RS03780 0.17 -3.5 782,892 - BWI76_RS03780 0.17 +1.1 782,893 + BWI76_RS03780 0.17 -0.5 782,902 + BWI76_RS03780 0.19 +0.4 782,910 + BWI76_RS03780 0.20 +1.0 782,920 + BWI76_RS03780 0.22 -0.3 782,928 - BWI76_RS03780 0.23 +1.6 782,974 + BWI76_RS03780 0.30 -1.3 783,013 + BWI76_RS03780 0.36 +3.8 783,013 + BWI76_RS03780 0.36 +1.5 783,013 + BWI76_RS03780 0.36 +0.8 783,021 - BWI76_RS03780 0.37 -2.9 783,021 - BWI76_RS03780 0.37 +0.2 783,021 - BWI76_RS03780 0.37 -0.4 783,108 - BWI76_RS03780 0.51 +0.9 783,108 - BWI76_RS03780 0.51 +1.2 783,177 - BWI76_RS03780 0.62 +0.7 783,271 + BWI76_RS03780 0.76 -2.2 783,299 + BWI76_RS03780 0.81 -2.1 783,313 + BWI76_RS03780 0.83 +0.8 783,321 - BWI76_RS03780 0.84 +0.9 783,346 + BWI76_RS03780 0.88 +0.2 783,346 + BWI76_RS03780 0.88 +0.5 783,351 + BWI76_RS03780 0.89 +2.3 783,396 + +0.8 783,411 + +1.5 783,440 + -1.1 783,441 - -0.8 783,444 + +0.0 783,450 + -0.0 783,450 + -0.0 783,450 + -0.8 783,450 + +0.2 783,452 - -3.0 783,458 - +0.0 783,458 - +1.0 783,458 - -0.9 783,546 - -2.3 783,658 - BWI76_RS03785 0.23 -1.0 783,701 + BWI76_RS03785 0.28 +0.6 783,709 - BWI76_RS03785 0.29 +0.5 783,711 + BWI76_RS03785 0.30 -0.7 783,929 - BWI76_RS03785 0.56 +0.1 784,028 + BWI76_RS03785 0.69 -0.8 784,050 + BWI76_RS03785 0.71 +1.1 784,050 + BWI76_RS03785 0.71 -0.4 784,057 + BWI76_RS03785 0.72 -1.7 784,058 - BWI76_RS03785 0.72 -1.7 784,065 - BWI76_RS03785 0.73 -0.1 784,119 - BWI76_RS03785 0.80 -0.9 784,119 - BWI76_RS03785 0.80 +0.1 784,119 - BWI76_RS03785 0.80 -0.9 784,119 - BWI76_RS03785 0.80 -0.4 784,119 - BWI76_RS03785 0.80 +0.2 784,212 - -2.2 784,301 - -0.4 784,301 - -0.6 784,334 - -0.8 784,427 - BWI76_RS03790 0.13 -3.1 784,457 + BWI76_RS03790 0.20 -0.0 784,504 + BWI76_RS03790 0.30 -0.2 784,512 - BWI76_RS03790 0.32 -0.2 784,692 + BWI76_RS03790 0.71 -0.1 784,725 + BWI76_RS03790 0.79 -1.1 784,939 + +0.3 784,959 + -0.1 784,997 + -1.3 785,090 - -2.0 785,151 + BWI76_RS03795 0.11 +0.3 785,159 - BWI76_RS03795 0.12 +0.1
Or see this region's nucleotide sequence