Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23295

Experiment: KLEB17 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23285 and BWI76_RS23290 are separated by 16 nucleotidesBWI76_RS23290 and BWI76_RS23295 are separated by 85 nucleotidesBWI76_RS23295 and BWI76_RS23300 are separated by 124 nucleotidesBWI76_RS23300 and BWI76_RS23305 are separated by 236 nucleotides BWI76_RS23285: BWI76_RS23285 - hypothetical protein, at 4,857,315 to 4,857,539 _RS23285 BWI76_RS23290: BWI76_RS23290 - DNA mismatch repair protein MutH, at 4,857,556 to 4,858,248 _RS23290 BWI76_RS23295: BWI76_RS23295 - tellurium resistance protein TerC, at 4,858,334 to 4,859,047 _RS23295 BWI76_RS23300: BWI76_RS23300 - YgdI/YgdR family lipoprotein, at 4,859,172 to 4,859,390 _RS23300 BWI76_RS23305: BWI76_RS23305 - NADP(H)-dependent aldo-keto reductase, at 4,859,627 to 4,860,667 _RS23305 Position (kb) 4858 4859 4860Strain fitness (log2 ratio) -3 -2 -1 0 1at 4857.369 kb on + strand, within BWI76_RS23285at 4857.584 kb on - strandat 4857.656 kb on + strand, within BWI76_RS23290at 4857.840 kb on - strand, within BWI76_RS23290at 4857.853 kb on + strand, within BWI76_RS23290at 4857.927 kb on + strand, within BWI76_RS23290at 4857.956 kb on - strand, within BWI76_RS23290at 4858.052 kb on + strand, within BWI76_RS23290at 4858.060 kb on - strand, within BWI76_RS23290at 4858.129 kb on + strand, within BWI76_RS23290at 4858.134 kb on + strand, within BWI76_RS23290at 4858.137 kb on - strand, within BWI76_RS23290at 4858.165 kb on + strand, within BWI76_RS23290at 4858.282 kb on + strandat 4858.290 kb on - strandat 4858.365 kb on - strandat 4858.458 kb on - strand, within BWI76_RS23295at 4858.487 kb on + strand, within BWI76_RS23295at 4858.489 kb on + strand, within BWI76_RS23295at 4858.525 kb on + strand, within BWI76_RS23295at 4858.682 kb on + strand, within BWI76_RS23295at 4858.760 kb on - strand, within BWI76_RS23295at 4858.928 kb on + strand, within BWI76_RS23295at 4858.975 kb on - strand, within BWI76_RS23295at 4859.010 kb on + strandat 4859.146 kb on - strandat 4859.291 kb on - strand, within BWI76_RS23300at 4859.296 kb on - strand, within BWI76_RS23300at 4859.328 kb on + strand, within BWI76_RS23300at 4859.336 kb on + strand, within BWI76_RS23300at 4859.427 kb on + strandat 4859.485 kb on - strandat 4859.495 kb on + strandat 4859.503 kb on - strandat 4859.503 kb on - strandat 4859.513 kb on - strandat 4859.592 kb on + strandat 4859.592 kb on + strandat 4859.632 kb on + strandat 4859.642 kb on + strandat 4859.650 kb on - strandat 4859.665 kb on - strandat 4859.670 kb on + strandat 4859.678 kb on - strandat 4859.680 kb on + strandat 4859.731 kb on + strandat 4859.880 kb on + strand, within BWI76_RS23305

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 0.1
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4,857,369 + BWI76_RS23285 0.24 -0.1
4,857,584 - +1.3
4,857,656 + BWI76_RS23290 0.14 +0.5
4,857,840 - BWI76_RS23290 0.41 -0.5
4,857,853 + BWI76_RS23290 0.43 +0.9
4,857,927 + BWI76_RS23290 0.54 +0.5
4,857,956 - BWI76_RS23290 0.58 -0.0
4,858,052 + BWI76_RS23290 0.72 +1.7
4,858,060 - BWI76_RS23290 0.73 +0.3
4,858,129 + BWI76_RS23290 0.83 -1.0
4,858,134 + BWI76_RS23290 0.83 -3.1
4,858,137 - BWI76_RS23290 0.84 +0.5
4,858,165 + BWI76_RS23290 0.88 +1.5
4,858,282 + -0.7
4,858,290 - +0.4
4,858,365 - -0.6
4,858,458 - BWI76_RS23295 0.17 -0.1
4,858,487 + BWI76_RS23295 0.21 -0.2
4,858,489 + BWI76_RS23295 0.22 -1.2
4,858,525 + BWI76_RS23295 0.27 +0.5
4,858,682 + BWI76_RS23295 0.49 -0.5
4,858,760 - BWI76_RS23295 0.60 -0.6
4,858,928 + BWI76_RS23295 0.83 -0.1
4,858,975 - BWI76_RS23295 0.90 +0.6
4,859,010 + +0.3
4,859,146 - -1.0
4,859,291 - BWI76_RS23300 0.54 -0.1
4,859,296 - BWI76_RS23300 0.57 +0.6
4,859,328 + BWI76_RS23300 0.71 -0.5
4,859,336 + BWI76_RS23300 0.75 -1.0
4,859,427 + -0.8
4,859,485 - -1.3
4,859,495 + -3.3
4,859,503 - -1.6
4,859,503 - +0.5
4,859,513 - -0.6
4,859,592 + +0.7
4,859,592 + +0.3
4,859,632 + +0.8
4,859,642 + +0.9
4,859,650 - +1.3
4,859,665 - -0.3
4,859,670 + -1.1
4,859,678 - -0.5
4,859,680 + -0.4
4,859,731 + -0.0
4,859,880 + BWI76_RS23305 0.24 +1.2

Or see this region's nucleotide sequence