Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03470

Experiment: KLEB17 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03465 and BWI76_RS03470 are separated by 66 nucleotidesBWI76_RS03470 and BWI76_RS03475 are separated by 339 nucleotidesBWI76_RS03475 and BWI76_RS03480 are separated by 53 nucleotides BWI76_RS03465: BWI76_RS03465 - 5'/3'-nucleotidase SurE, at 715,467 to 716,342 _RS03465 BWI76_RS03470: BWI76_RS03470 - 50S ribosomal protein L16 arginine hydroxylase, at 716,409 to 717,533 _RS03470 BWI76_RS03475: BWI76_RS03475 - hypothetical protein, at 717,873 to 718,078 _RS03475 BWI76_RS03480: BWI76_RS03480 - 16S ribosomal RNA, at 718,132 to 719,685 _RS03480 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 715.417 kb on - strandat 715.453 kb on + strandat 715.457 kb on - strandat 715.474 kb on + strandat 715.507 kb on - strandat 715.561 kb on - strand, within BWI76_RS03465at 715.611 kb on + strand, within BWI76_RS03465at 715.617 kb on + strand, within BWI76_RS03465at 715.624 kb on + strand, within BWI76_RS03465at 715.625 kb on + strand, within BWI76_RS03465at 715.625 kb on + strand, within BWI76_RS03465at 715.625 kb on + strand, within BWI76_RS03465at 715.625 kb on - strand, within BWI76_RS03465at 715.659 kb on + strand, within BWI76_RS03465at 715.680 kb on + strand, within BWI76_RS03465at 715.686 kb on - strand, within BWI76_RS03465at 715.686 kb on - strand, within BWI76_RS03465at 715.733 kb on - strand, within BWI76_RS03465at 715.762 kb on + strand, within BWI76_RS03465at 715.850 kb on + strand, within BWI76_RS03465at 715.850 kb on + strand, within BWI76_RS03465at 715.858 kb on - strand, within BWI76_RS03465at 715.971 kb on + strand, within BWI76_RS03465at 715.971 kb on + strand, within BWI76_RS03465at 716.029 kb on - strandat 716.065 kb on + strandat 716.065 kb on + strand, within BWI76_RS03465at 716.073 kb on - strand, within BWI76_RS03465at 716.073 kb on - strand, within BWI76_RS03465at 716.141 kb on + strand, within BWI76_RS03465at 716.141 kb on + strand, within BWI76_RS03465at 716.144 kb on - strand, within BWI76_RS03465at 716.146 kb on + strand, within BWI76_RS03465at 716.161 kb on + strand, within BWI76_RS03465at 716.161 kb on + strand, within BWI76_RS03465at 716.161 kb on + strand, within BWI76_RS03465at 716.161 kb on + strand, within BWI76_RS03465at 716.169 kb on - strand, within BWI76_RS03465at 716.169 kb on - strand, within BWI76_RS03465at 716.169 kb on - strand, within BWI76_RS03465at 716.185 kb on + strand, within BWI76_RS03465at 716.193 kb on - strand, within BWI76_RS03465at 716.229 kb on + strand, within BWI76_RS03465at 716.277 kb on - strandat 716.279 kb on + strandat 716.306 kb on + strandat 716.306 kb on + strandat 716.314 kb on - strandat 716.326 kb on - strandat 716.326 kb on - strandat 716.328 kb on - strandat 716.389 kb on + strandat 716.432 kb on - strandat 716.470 kb on + strandat 716.489 kb on + strandat 716.500 kb on + strandat 716.502 kb on - strandat 716.506 kb on - strandat 716.508 kb on - strandat 716.508 kb on - strandat 716.508 kb on - strandat 716.513 kb on + strandat 716.513 kb on + strandat 716.518 kb on - strandat 716.518 kb on - strandat 716.521 kb on - strandat 716.521 kb on - strandat 716.526 kb on - strand, within BWI76_RS03470at 716.666 kb on - strand, within BWI76_RS03470at 716.726 kb on + strand, within BWI76_RS03470at 716.733 kb on + strand, within BWI76_RS03470at 716.802 kb on - strand, within BWI76_RS03470at 716.804 kb on + strand, within BWI76_RS03470at 716.856 kb on - strand, within BWI76_RS03470at 716.888 kb on + strand, within BWI76_RS03470at 716.933 kb on - strand, within BWI76_RS03470at 716.938 kb on + strand, within BWI76_RS03470at 716.946 kb on - strand, within BWI76_RS03470at 717.042 kb on - strand, within BWI76_RS03470at 717.049 kb on + strand, within BWI76_RS03470at 717.057 kb on - strand, within BWI76_RS03470at 717.070 kb on + strand, within BWI76_RS03470at 717.142 kb on + strand, within BWI76_RS03470at 717.248 kb on + strand, within BWI76_RS03470at 717.248 kb on + strand, within BWI76_RS03470at 717.256 kb on - strand, within BWI76_RS03470at 717.260 kb on + strand, within BWI76_RS03470at 717.293 kb on - strand, within BWI76_RS03470at 717.350 kb on + strand, within BWI76_RS03470at 717.405 kb on - strand, within BWI76_RS03470at 717.529 kb on + strandat 717.529 kb on + strandat 717.581 kb on + strandat 717.589 kb on - strandat 717.596 kb on + strandat 717.602 kb on + strandat 717.602 kb on + strandat 717.610 kb on - strandat 717.610 kb on - strandat 717.653 kb on - strandat 717.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 0.1
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715,417 - -0.7
715,453 + -0.2
715,457 - +0.7
715,474 + +1.2
715,507 - +2.2
715,561 - BWI76_RS03465 0.11 -0.2
715,611 + BWI76_RS03465 0.16 +0.3
715,617 + BWI76_RS03465 0.17 +0.5
715,624 + BWI76_RS03465 0.18 -3.0
715,625 + BWI76_RS03465 0.18 +1.0
715,625 + BWI76_RS03465 0.18 -0.3
715,625 + BWI76_RS03465 0.18 -0.2
715,625 - BWI76_RS03465 0.18 +0.6
715,659 + BWI76_RS03465 0.22 -0.3
715,680 + BWI76_RS03465 0.24 -0.2
715,686 - BWI76_RS03465 0.25 +0.5
715,686 - BWI76_RS03465 0.25 +0.8
715,733 - BWI76_RS03465 0.30 -0.3
715,762 + BWI76_RS03465 0.34 +0.8
715,850 + BWI76_RS03465 0.44 -0.1
715,850 + BWI76_RS03465 0.44 -0.4
715,858 - BWI76_RS03465 0.45 +1.3
715,971 + BWI76_RS03465 0.58 -0.1
715,971 + BWI76_RS03465 0.58 -1.2
716,029 - +2.3
716,065 + -1.0
716,065 + BWI76_RS03465 0.68 +1.5
716,073 - BWI76_RS03465 0.69 +0.4
716,073 - BWI76_RS03465 0.69 -0.0
716,141 + BWI76_RS03465 0.77 +0.4
716,141 + BWI76_RS03465 0.77 +0.0
716,144 - BWI76_RS03465 0.77 -0.2
716,146 + BWI76_RS03465 0.78 +0.0
716,161 + BWI76_RS03465 0.79 -0.3
716,161 + BWI76_RS03465 0.79 +0.4
716,161 + BWI76_RS03465 0.79 +0.2
716,161 + BWI76_RS03465 0.79 +0.0
716,169 - BWI76_RS03465 0.80 +0.9
716,169 - BWI76_RS03465 0.80 +0.1
716,169 - BWI76_RS03465 0.80 +0.4
716,185 + BWI76_RS03465 0.82 +0.4
716,193 - BWI76_RS03465 0.83 +0.5
716,229 + BWI76_RS03465 0.87 +0.4
716,277 - -2.7
716,279 + +1.6
716,306 + +0.8
716,306 + -0.4
716,314 - +0.6
716,326 - -1.2
716,326 - -0.2
716,328 - +1.1
716,389 + -0.3
716,432 - +1.0
716,470 + -1.9
716,489 + +0.1
716,500 + +0.5
716,502 - +0.2
716,506 - -0.1
716,508 - -1.5
716,508 - +0.2
716,508 - -1.1
716,513 + +0.6
716,513 + -0.1
716,518 - +0.2
716,518 - +0.3
716,521 - +1.1
716,521 - +1.5
716,526 - BWI76_RS03470 0.10 -0.5
716,666 - BWI76_RS03470 0.23 +2.8
716,726 + BWI76_RS03470 0.28 -0.5
716,733 + BWI76_RS03470 0.29 -0.0
716,802 - BWI76_RS03470 0.35 +0.7
716,804 + BWI76_RS03470 0.35 -0.4
716,856 - BWI76_RS03470 0.40 -1.3
716,888 + BWI76_RS03470 0.43 +0.8
716,933 - BWI76_RS03470 0.47 +0.2
716,938 + BWI76_RS03470 0.47 +0.4
716,946 - BWI76_RS03470 0.48 +1.1
717,042 - BWI76_RS03470 0.56 +0.6
717,049 + BWI76_RS03470 0.57 +0.7
717,057 - BWI76_RS03470 0.58 -0.1
717,070 + BWI76_RS03470 0.59 +0.4
717,142 + BWI76_RS03470 0.65 +0.5
717,248 + BWI76_RS03470 0.75 +0.8
717,248 + BWI76_RS03470 0.75 +0.3
717,256 - BWI76_RS03470 0.75 -2.3
717,260 + BWI76_RS03470 0.76 +0.2
717,293 - BWI76_RS03470 0.79 -1.2
717,350 + BWI76_RS03470 0.84 -0.1
717,405 - BWI76_RS03470 0.89 -0.3
717,529 + +1.9
717,529 + +0.9
717,581 + -1.6
717,589 - -0.1
717,596 + -0.1
717,602 + +0.5
717,602 + +0.4
717,610 - +0.5
717,610 - +1.1
717,653 - -0.1
717,866 - +1.0

Or see this region's nucleotide sequence