Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24870 and BWI76_RS24875 are separated by 176 nucleotides BWI76_RS24875 and BWI76_RS24880 are separated by 13 nucleotides BWI76_RS24880 and BWI76_RS24885 are separated by 26 nucleotides BWI76_RS24885 and BWI76_RS24890 are separated by 5 nucleotides
BWI76_RS24870: BWI76_RS24870 - phosphocarrier, HPr family protein, at 5,183,033 to 5,183,848
_RS24870
BWI76_RS24875: BWI76_RS24875 - tagatose-1,6-bisphosphate aldolase, at 5,184,025 to 5,185,296
_RS24875
BWI76_RS24880: BWI76_RS24880 - PTS galactitol transporter subunit IIA, at 5,185,310 to 5,185,777
_RS24880
BWI76_RS24885: BWI76_RS24885 - PTS galactitol transporter subunit IIB, at 5,185,804 to 5,186,088
_RS24885
BWI76_RS24890: BWI76_RS24890 - PTS system galactitol-specific transporter subunit IIC, at 5,186,094 to 5,187,467
_RS24890
Position (kb) 5184
5185
5186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5183.051 kb on - strand at 5183.116 kb on + strand, within BWI76_RS24870 at 5183.124 kb on - strand, within BWI76_RS24870 at 5183.363 kb on + strand, within BWI76_RS24870 at 5183.364 kb on + strand, within BWI76_RS24870 at 5183.372 kb on - strand, within BWI76_RS24870 at 5183.389 kb on + strand, within BWI76_RS24870 at 5183.423 kb on + strand, within BWI76_RS24870 at 5183.489 kb on + strand, within BWI76_RS24870 at 5183.514 kb on + strand, within BWI76_RS24870 at 5183.538 kb on + strand, within BWI76_RS24870 at 5183.670 kb on + strand, within BWI76_RS24870 at 5183.954 kb on + strand at 5183.962 kb on - strand at 5183.962 kb on - strand at 5183.962 kb on - strand at 5184.138 kb on + strand at 5184.150 kb on + strand at 5184.266 kb on + strand, within BWI76_RS24875 at 5184.295 kb on - strand, within BWI76_RS24875 at 5184.400 kb on + strand, within BWI76_RS24875 at 5184.410 kb on + strand, within BWI76_RS24875 at 5184.510 kb on - strand, within BWI76_RS24875 at 5184.588 kb on - strand, within BWI76_RS24875 at 5184.658 kb on + strand, within BWI76_RS24875 at 5184.708 kb on - strand, within BWI76_RS24875 at 5184.871 kb on + strand, within BWI76_RS24875 at 5184.879 kb on - strand, within BWI76_RS24875 at 5184.879 kb on - strand, within BWI76_RS24875 at 5185.029 kb on - strand, within BWI76_RS24875 at 5185.049 kb on + strand, within BWI76_RS24875 at 5185.072 kb on + strand, within BWI76_RS24875 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.167 kb on + strand, within BWI76_RS24875 at 5185.175 kb on - strand at 5185.175 kb on - strand at 5185.175 kb on - strand at 5185.175 kb on - strand at 5185.242 kb on + strand at 5185.267 kb on + strand at 5185.437 kb on - strand, within BWI76_RS24880 at 5185.495 kb on + strand, within BWI76_RS24880 at 5185.495 kb on - strand, within BWI76_RS24880 at 5185.644 kb on - strand, within BWI76_RS24880 at 5185.837 kb on - strand, within BWI76_RS24885 at 5185.965 kb on - strand, within BWI76_RS24885 at 5185.991 kb on + strand, within BWI76_RS24885 at 5186.091 kb on + strand at 5186.200 kb on + strand at 5186.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 5,183,051 - +0.7 5,183,116 + BWI76_RS24870 0.10 -1.2 5,183,124 - BWI76_RS24870 0.11 +0.4 5,183,363 + BWI76_RS24870 0.40 +0.5 5,183,364 + BWI76_RS24870 0.41 -0.2 5,183,372 - BWI76_RS24870 0.42 -0.7 5,183,389 + BWI76_RS24870 0.44 +0.6 5,183,423 + BWI76_RS24870 0.48 -0.1 5,183,489 + BWI76_RS24870 0.56 -0.3 5,183,514 + BWI76_RS24870 0.59 +0.8 5,183,538 + BWI76_RS24870 0.62 +0.0 5,183,670 + BWI76_RS24870 0.78 -1.9 5,183,954 + +0.4 5,183,962 - +2.8 5,183,962 - -1.3 5,183,962 - +1.2 5,184,138 + +0.4 5,184,150 + +0.2 5,184,266 + BWI76_RS24875 0.19 -1.8 5,184,295 - BWI76_RS24875 0.21 -0.7 5,184,400 + BWI76_RS24875 0.29 -0.8 5,184,410 + BWI76_RS24875 0.30 -0.7 5,184,510 - BWI76_RS24875 0.38 +0.3 5,184,588 - BWI76_RS24875 0.44 +1.1 5,184,658 + BWI76_RS24875 0.50 +0.8 5,184,708 - BWI76_RS24875 0.54 -0.1 5,184,871 + BWI76_RS24875 0.67 +0.4 5,184,879 - BWI76_RS24875 0.67 +0.4 5,184,879 - BWI76_RS24875 0.67 -0.2 5,185,029 - BWI76_RS24875 0.79 +0.3 5,185,049 + BWI76_RS24875 0.81 -0.2 5,185,072 + BWI76_RS24875 0.82 -2.2 5,185,167 + BWI76_RS24875 0.90 +1.1 5,185,167 + BWI76_RS24875 0.90 -2.0 5,185,167 + BWI76_RS24875 0.90 -0.4 5,185,167 + BWI76_RS24875 0.90 +1.1 5,185,175 - +0.8 5,185,175 - -0.5 5,185,175 - -0.3 5,185,175 - +0.5 5,185,242 + +0.5 5,185,267 + -2.8 5,185,437 - BWI76_RS24880 0.27 -0.3 5,185,495 + BWI76_RS24880 0.40 -3.7 5,185,495 - BWI76_RS24880 0.40 -0.5 5,185,644 - BWI76_RS24880 0.71 +0.4 5,185,837 - BWI76_RS24885 0.12 -2.9 5,185,965 - BWI76_RS24885 0.56 -2.2 5,185,991 + BWI76_RS24885 0.66 -1.7 5,186,091 + -1.9 5,186,200 + +0.7 5,186,200 + +0.3
Or see this region's nucleotide sequence