Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24235 and BWI76_RS24240 are separated by 117 nucleotides BWI76_RS24240 and BWI76_RS24245 overlap by 59 nucleotides
BWI76_RS24235: BWI76_RS24235 - Branched-chain-amino-acid transaminase (EC 2.6.1.42) (from data) , at 5,050,849 to 5,052,030
_RS24235
BWI76_RS24240: BWI76_RS24240 - hypothetical protein, at 5,052,148 to 5,052,354
_RS24240
BWI76_RS24245: BWI76_RS24245 - bifunctional glutathionylspermidine amidase/glutathionylspermidine synthase, at 5,052,296 to 5,054,167
_RS24245
Position (kb)
5052
5053 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5051.542 kb on - strand, within BWI76_RS24235 at 5051.806 kb on - strand, within BWI76_RS24235 at 5051.860 kb on + strand, within BWI76_RS24235 at 5051.869 kb on + strand, within BWI76_RS24235 at 5051.869 kb on - strand, within BWI76_RS24235 at 5051.892 kb on - strand, within BWI76_RS24235 at 5051.947 kb on + strand at 5051.959 kb on - strand at 5051.970 kb on - strand at 5051.987 kb on + strand at 5052.194 kb on + strand, within BWI76_RS24240 at 5052.414 kb on + strand at 5052.453 kb on + strand at 5052.818 kb on - strand, within BWI76_RS24245 at 5052.977 kb on - strand, within BWI76_RS24245 at 5053.002 kb on + strand, within BWI76_RS24245 at 5053.021 kb on + strand, within BWI76_RS24245 at 5053.088 kb on + strand, within BWI76_RS24245
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 5,051,542 - BWI76_RS24235 0.59 +1.1 5,051,806 - BWI76_RS24235 0.81 -0.0 5,051,860 + BWI76_RS24235 0.86 +0.7 5,051,869 + BWI76_RS24235 0.86 +1.6 5,051,869 - BWI76_RS24235 0.86 -3.1 5,051,892 - BWI76_RS24235 0.88 -0.4 5,051,947 + -0.1 5,051,959 - +0.7 5,051,970 - +0.4 5,051,987 + -1.3 5,052,194 + BWI76_RS24240 0.22 -1.3 5,052,414 + -0.1 5,052,453 + -1.0 5,052,818 - BWI76_RS24245 0.28 -2.4 5,052,977 - BWI76_RS24245 0.36 -0.7 5,053,002 + BWI76_RS24245 0.38 -0.6 5,053,021 + BWI76_RS24245 0.39 +0.9 5,053,088 + BWI76_RS24245 0.42 +0.9
Or see this region's nucleotide sequence