Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19465 and BWI76_RS19470 are separated by 53 nucleotides BWI76_RS19470 and BWI76_RS19475 overlap by 7 nucleotides BWI76_RS19475 and BWI76_RS19480 are separated by 210 nucleotides
BWI76_RS19465: BWI76_RS19465 - hypothetical protein, at 4,068,223 to 4,068,690
_RS19465
BWI76_RS19470: BWI76_RS19470 - DNA-binding response regulator, at 4,068,744 to 4,069,463
_RS19470
BWI76_RS19475: BWI76_RS19475 - signal transduction histidine kinase, at 4,069,457 to 4,071,145
_RS19475
BWI76_RS19480: BWI76_RS19480 - transcriptional regulator, at 4,071,356 to 4,072,114
_RS19480
Position (kb)
4069
4070
4071
4072 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4068.528 kb on + strand, within BWI76_RS19465 at 4068.530 kb on - strand, within BWI76_RS19465 at 4068.653 kb on + strand at 4069.303 kb on + strand, within BWI76_RS19470 at 4069.528 kb on - strand at 4069.690 kb on + strand, within BWI76_RS19475 at 4069.768 kb on + strand, within BWI76_RS19475 at 4070.172 kb on - strand, within BWI76_RS19475 at 4070.380 kb on - strand, within BWI76_RS19475 at 4070.627 kb on - strand, within BWI76_RS19475 at 4070.627 kb on - strand, within BWI76_RS19475 at 4070.779 kb on - strand, within BWI76_RS19475 at 4070.794 kb on - strand, within BWI76_RS19475 at 4071.122 kb on - strand at 4071.333 kb on + strand at 4071.663 kb on + strand, within BWI76_RS19480 at 4071.682 kb on + strand, within BWI76_RS19480 at 4071.906 kb on - strand, within BWI76_RS19480
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 4,068,528 + BWI76_RS19465 0.65 +0.7 4,068,530 - BWI76_RS19465 0.66 -1.3 4,068,653 + +1.8 4,069,303 + BWI76_RS19470 0.78 -0.2 4,069,528 - -0.3 4,069,690 + BWI76_RS19475 0.14 +1.5 4,069,768 + BWI76_RS19475 0.18 +0.5 4,070,172 - BWI76_RS19475 0.42 -2.0 4,070,380 - BWI76_RS19475 0.55 +1.4 4,070,627 - BWI76_RS19475 0.69 -0.0 4,070,627 - BWI76_RS19475 0.69 +2.6 4,070,779 - BWI76_RS19475 0.78 +0.7 4,070,794 - BWI76_RS19475 0.79 +0.3 4,071,122 - -0.7 4,071,333 + -1.9 4,071,663 + BWI76_RS19480 0.40 -1.8 4,071,682 + BWI76_RS19480 0.43 +0.3 4,071,906 - BWI76_RS19480 0.72 -1.9
Or see this region's nucleotide sequence