Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07880

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07875 and BWI76_RS07880 are separated by 38 nucleotidesBWI76_RS07880 and BWI76_RS07885 are separated by 11 nucleotides BWI76_RS07875: BWI76_RS07875 - dihydrofolate reductase, at 1,671,520 to 1,672,548 _RS07875 BWI76_RS07880: BWI76_RS07880 - PfkB domain-containing protein, at 1,672,587 to 1,673,531 _RS07880 BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544 _RS07885 Position (kb) 1672 1673 1674Strain fitness (log2 ratio) -2 -1 0 1 2at 1671.614 kb on - strandat 1671.682 kb on - strand, within BWI76_RS07875at 1671.999 kb on + strand, within BWI76_RS07875at 1672.036 kb on - strand, within BWI76_RS07875at 1672.102 kb on - strand, within BWI76_RS07875at 1672.234 kb on - strand, within BWI76_RS07875at 1672.789 kb on + strand, within BWI76_RS07880at 1672.994 kb on + strand, within BWI76_RS07880at 1673.002 kb on - strand, within BWI76_RS07880at 1673.186 kb on + strand, within BWI76_RS07880at 1673.186 kb on + strand, within BWI76_RS07880at 1673.278 kb on - strand, within BWI76_RS07880at 1673.524 kb on - strandat 1673.680 kb on + strand, within BWI76_RS07885at 1673.754 kb on + strand, within BWI76_RS07885at 1673.928 kb on - strand, within BWI76_RS07885at 1674.113 kb on + strand, within BWI76_RS07885

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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1,671,614 - -0.5
1,671,682 - BWI76_RS07875 0.16 +0.8
1,671,999 + BWI76_RS07875 0.47 +0.5
1,672,036 - BWI76_RS07875 0.50 -1.1
1,672,102 - BWI76_RS07875 0.57 +1.1
1,672,234 - BWI76_RS07875 0.69 +0.7
1,672,789 + BWI76_RS07880 0.21 +1.1
1,672,994 + BWI76_RS07880 0.43 +0.6
1,673,002 - BWI76_RS07880 0.44 +0.6
1,673,186 + BWI76_RS07880 0.63 +0.9
1,673,186 + BWI76_RS07880 0.63 -1.9
1,673,278 - BWI76_RS07880 0.73 +1.0
1,673,524 - -2.4
1,673,680 + BWI76_RS07885 0.14 -0.6
1,673,754 + BWI76_RS07885 0.21 +2.0
1,673,928 - BWI76_RS07885 0.38 +0.4
1,674,113 + BWI76_RS07885 0.57 +1.1

Or see this region's nucleotide sequence