Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06085

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06075 and BWI76_RS06080 overlap by 4 nucleotidesBWI76_RS06080 and BWI76_RS06085 are separated by 82 nucleotidesBWI76_RS06085 and BWI76_RS06090 are separated by 404 nucleotides BWI76_RS06075: BWI76_RS06075 - taurine transporter subunit, at 1,276,636 to 1,277,463 _RS06075 BWI76_RS06080: BWI76_RS06080 - taurine dioxygenase, at 1,277,460 to 1,278,311 _RS06080 BWI76_RS06085: BWI76_RS06085 - hypothetical protein, at 1,278,394 to 1,280,112 _RS06085 BWI76_RS06090: BWI76_RS06090 - delta-aminolevulinic acid dehydratase, at 1,280,517 to 1,281,491 _RS06090 Position (kb) 1278 1279 1280 1281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1277.902 kb on - strand, within BWI76_RS06080at 1278.216 kb on + strand, within BWI76_RS06080at 1278.224 kb on - strand, within BWI76_RS06080at 1278.257 kb on + strandat 1278.460 kb on + strandat 1278.468 kb on - strandat 1278.552 kb on + strandat 1278.554 kb on + strandat 1278.563 kb on + strandat 1278.801 kb on + strand, within BWI76_RS06085at 1278.847 kb on - strand, within BWI76_RS06085at 1278.878 kb on - strand, within BWI76_RS06085at 1278.888 kb on + strand, within BWI76_RS06085at 1278.896 kb on - strand, within BWI76_RS06085at 1278.957 kb on + strand, within BWI76_RS06085at 1279.406 kb on - strand, within BWI76_RS06085at 1279.511 kb on + strand, within BWI76_RS06085at 1279.519 kb on - strand, within BWI76_RS06085at 1279.831 kb on + strand, within BWI76_RS06085at 1279.831 kb on + strand, within BWI76_RS06085at 1279.831 kb on + strand, within BWI76_RS06085at 1279.976 kb on - strandat 1280.071 kb on - strandat 1280.083 kb on - strandat 1280.165 kb on + strandat 1280.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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1,277,902 - BWI76_RS06080 0.52 -0.5
1,278,216 + BWI76_RS06080 0.89 -0.5
1,278,224 - BWI76_RS06080 0.90 -2.7
1,278,257 + +0.3
1,278,460 + +0.7
1,278,468 - +1.2
1,278,552 + +0.5
1,278,554 + +1.4
1,278,563 + +0.1
1,278,801 + BWI76_RS06085 0.24 -1.6
1,278,847 - BWI76_RS06085 0.26 +0.2
1,278,878 - BWI76_RS06085 0.28 +1.4
1,278,888 + BWI76_RS06085 0.29 +0.7
1,278,896 - BWI76_RS06085 0.29 -0.1
1,278,957 + BWI76_RS06085 0.33 +0.8
1,279,406 - BWI76_RS06085 0.59 +1.0
1,279,511 + BWI76_RS06085 0.65 +2.4
1,279,519 - BWI76_RS06085 0.65 -0.2
1,279,831 + BWI76_RS06085 0.84 -0.1
1,279,831 + BWI76_RS06085 0.84 -2.9
1,279,831 + BWI76_RS06085 0.84 +0.5
1,279,976 - +1.0
1,280,071 - +0.1
1,280,083 - +0.6
1,280,165 + +0.8
1,280,371 + +2.1

Or see this region's nucleotide sequence