Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04285

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04280 and BWI76_RS04285 are separated by 46 nucleotidesBWI76_RS04285 and BWI76_RS04290 are separated by 88 nucleotidesBWI76_RS04290 and BWI76_RS04295 are separated by 27 nucleotides BWI76_RS04280: BWI76_RS04280 - MFS transporter, at 881,500 to 882,810 _RS04280 BWI76_RS04285: BWI76_RS04285 - hypothetical protein, at 882,857 to 883,423 _RS04285 BWI76_RS04290: BWI76_RS04290 - hypothetical protein, at 883,512 to 884,261 _RS04290 BWI76_RS04295: BWI76_RS04295 - hypothetical protein, at 884,289 to 884,693 _RS04295 Position (kb) 882 883 884Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 881.872 kb on + strand, within BWI76_RS04280at 882.024 kb on + strand, within BWI76_RS04280at 882.032 kb on - strand, within BWI76_RS04280at 882.032 kb on - strand, within BWI76_RS04280at 882.050 kb on + strand, within BWI76_RS04280at 882.192 kb on + strand, within BWI76_RS04280at 882.343 kb on - strand, within BWI76_RS04280at 882.614 kb on + strand, within BWI76_RS04280at 882.622 kb on - strand, within BWI76_RS04280at 882.819 kb on + strandat 882.875 kb on + strandat 882.954 kb on - strand, within BWI76_RS04285at 882.955 kb on - strand, within BWI76_RS04285at 883.005 kb on + strand, within BWI76_RS04285at 883.074 kb on + strand, within BWI76_RS04285at 883.101 kb on - strand, within BWI76_RS04285at 883.111 kb on + strand, within BWI76_RS04285at 883.119 kb on - strand, within BWI76_RS04285at 883.119 kb on - strand, within BWI76_RS04285at 883.125 kb on - strand, within BWI76_RS04285at 883.125 kb on - strand, within BWI76_RS04285at 883.318 kb on + strand, within BWI76_RS04285at 883.350 kb on - strand, within BWI76_RS04285at 883.365 kb on - strand, within BWI76_RS04285at 883.393 kb on - strandat 883.408 kb on + strandat 883.416 kb on - strandat 883.472 kb on - strandat 883.510 kb on + strandat 883.574 kb on + strandat 883.582 kb on - strandat 883.582 kb on - strandat 883.590 kb on + strand, within BWI76_RS04290at 883.636 kb on + strand, within BWI76_RS04290at 883.644 kb on - strand, within BWI76_RS04290at 883.676 kb on + strand, within BWI76_RS04290at 883.771 kb on + strand, within BWI76_RS04290at 883.775 kb on + strand, within BWI76_RS04290at 883.778 kb on - strand, within BWI76_RS04290at 883.779 kb on - strand, within BWI76_RS04290at 883.789 kb on - strand, within BWI76_RS04290at 883.808 kb on + strand, within BWI76_RS04290at 883.814 kb on + strand, within BWI76_RS04290at 883.915 kb on - strand, within BWI76_RS04290at 883.977 kb on - strand, within BWI76_RS04290at 884.012 kb on + strand, within BWI76_RS04290at 884.046 kb on + strand, within BWI76_RS04290at 884.054 kb on - strand, within BWI76_RS04290at 884.054 kb on - strand, within BWI76_RS04290at 884.062 kb on + strand, within BWI76_RS04290at 884.112 kb on - strand, within BWI76_RS04290at 884.112 kb on - strand, within BWI76_RS04290at 884.127 kb on + strand, within BWI76_RS04290at 884.133 kb on - strand, within BWI76_RS04290at 884.135 kb on - strand, within BWI76_RS04290at 884.138 kb on + strand, within BWI76_RS04290at 884.138 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.140 kb on + strand, within BWI76_RS04290at 884.146 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.148 kb on - strand, within BWI76_RS04290at 884.151 kb on + strand, within BWI76_RS04290at 884.185 kb on - strand, within BWI76_RS04290at 884.227 kb on - strandat 884.227 kb on - strandat 884.231 kb on + strandat 884.239 kb on - strandat 884.239 kb on - strandat 884.239 kb on - strandat 884.286 kb on + strandat 884.294 kb on - strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.321 kb on + strandat 884.323 kb on + strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.329 kb on - strandat 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.330 kb on + strand, within BWI76_RS04295at 884.331 kb on - strandat 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.338 kb on - strand, within BWI76_RS04295at 884.370 kb on + strandat 884.380 kb on + strand, within BWI76_RS04295at 884.382 kb on - strand, within BWI76_RS04295at 884.395 kb on + strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.397 kb on - strand, within BWI76_RS04295at 884.419 kb on - strand, within BWI76_RS04295at 884.423 kb on + strand, within BWI76_RS04295

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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881,872 + BWI76_RS04280 0.28 -0.7
882,024 + BWI76_RS04280 0.40 +0.0
882,032 - BWI76_RS04280 0.41 +1.4
882,032 - BWI76_RS04280 0.41 -1.1
882,050 + BWI76_RS04280 0.42 -4.3
882,192 + BWI76_RS04280 0.53 -1.3
882,343 - BWI76_RS04280 0.64 -0.2
882,614 + BWI76_RS04280 0.85 +1.4
882,622 - BWI76_RS04280 0.86 +0.3
882,819 + +0.1
882,875 + -1.7
882,954 - BWI76_RS04285 0.17 -0.4
882,955 - BWI76_RS04285 0.17 -1.1
883,005 + BWI76_RS04285 0.26 -1.6
883,074 + BWI76_RS04285 0.38 -0.5
883,101 - BWI76_RS04285 0.43 -0.1
883,111 + BWI76_RS04285 0.45 -1.1
883,119 - BWI76_RS04285 0.46 +1.9
883,119 - BWI76_RS04285 0.46 -0.5
883,125 - BWI76_RS04285 0.47 -1.4
883,125 - BWI76_RS04285 0.47 +0.4
883,318 + BWI76_RS04285 0.81 +0.8
883,350 - BWI76_RS04285 0.87 -1.8
883,365 - BWI76_RS04285 0.90 -0.9
883,393 - -0.4
883,408 + -0.3
883,416 - -0.6
883,472 - -1.5
883,510 + -0.6
883,574 + +1.7
883,582 - -1.8
883,582 - +1.1
883,590 + BWI76_RS04290 0.10 +0.7
883,636 + BWI76_RS04290 0.17 +0.2
883,644 - BWI76_RS04290 0.18 -1.1
883,676 + BWI76_RS04290 0.22 -0.1
883,771 + BWI76_RS04290 0.35 -0.9
883,775 + BWI76_RS04290 0.35 -0.2
883,778 - BWI76_RS04290 0.35 +0.2
883,779 - BWI76_RS04290 0.36 -0.5
883,789 - BWI76_RS04290 0.37 -1.6
883,808 + BWI76_RS04290 0.39 +0.3
883,814 + BWI76_RS04290 0.40 -3.7
883,915 - BWI76_RS04290 0.54 +1.0
883,977 - BWI76_RS04290 0.62 -2.3
884,012 + BWI76_RS04290 0.67 -0.9
884,046 + BWI76_RS04290 0.71 -0.3
884,054 - BWI76_RS04290 0.72 +0.8
884,054 - BWI76_RS04290 0.72 -1.3
884,062 + BWI76_RS04290 0.73 +1.0
884,112 - BWI76_RS04290 0.80 -2.4
884,112 - BWI76_RS04290 0.80 +0.7
884,127 + BWI76_RS04290 0.82 -0.6
884,133 - BWI76_RS04290 0.83 -3.0
884,135 - BWI76_RS04290 0.83 -0.9
884,138 + BWI76_RS04290 0.83 -0.8
884,138 + BWI76_RS04290 0.83 +1.2
884,140 + BWI76_RS04290 0.84 -2.5
884,140 + BWI76_RS04290 0.84 -2.7
884,140 + BWI76_RS04290 0.84 -1.3
884,140 + BWI76_RS04290 0.84 +0.1
884,146 - BWI76_RS04290 0.85 -1.9
884,148 - BWI76_RS04290 0.85 -0.9
884,148 - BWI76_RS04290 0.85 +1.1
884,148 - BWI76_RS04290 0.85 -0.4
884,148 - BWI76_RS04290 0.85 +0.7
884,148 - BWI76_RS04290 0.85 +0.2
884,151 + BWI76_RS04290 0.85 +0.3
884,185 - BWI76_RS04290 0.90 -2.9
884,227 - -0.8
884,227 - +0.0
884,231 + -1.0
884,239 - -1.0
884,239 - -0.7
884,239 - +3.4
884,286 + -2.5
884,294 - -0.2
884,321 + -1.5
884,321 + -0.9
884,321 + +2.5
884,321 + -0.4
884,321 + -0.8
884,321 + +0.5
884,321 + +0.3
884,321 + -4.4
884,323 + +0.5
884,329 - -0.6
884,329 - -0.5
884,329 - +1.1
884,329 - +3.5
884,329 - -0.4
884,329 - -1.0
884,329 - -0.8
884,329 - +1.7
884,329 - -1.4
884,329 - +0.7
884,330 + BWI76_RS04295 0.10 +0.3
884,330 + BWI76_RS04295 0.10 -1.9
884,330 + BWI76_RS04295 0.10 -0.0
884,330 + BWI76_RS04295 0.10 -0.1
884,330 + BWI76_RS04295 0.10 -1.5
884,330 + BWI76_RS04295 0.10 -2.9
884,330 + BWI76_RS04295 0.10 -2.5
884,330 + BWI76_RS04295 0.10 -2.9
884,330 + BWI76_RS04295 0.10 +1.4
884,331 - -2.0
884,338 - BWI76_RS04295 0.12 -1.0
884,338 - BWI76_RS04295 0.12 -1.9
884,338 - BWI76_RS04295 0.12 -1.1
884,338 - BWI76_RS04295 0.12 +2.0
884,338 - BWI76_RS04295 0.12 -1.1
884,338 - BWI76_RS04295 0.12 +0.7
884,338 - BWI76_RS04295 0.12 +2.3
884,338 - BWI76_RS04295 0.12 -1.7
884,338 - BWI76_RS04295 0.12 -0.5
884,338 - BWI76_RS04295 0.12 +0.3
884,338 - BWI76_RS04295 0.12 -0.0
884,338 - BWI76_RS04295 0.12 -0.4
884,370 + -1.7
884,380 + BWI76_RS04295 0.22 -0.3
884,382 - BWI76_RS04295 0.23 +0.5
884,395 + BWI76_RS04295 0.26 -2.6
884,397 - BWI76_RS04295 0.27 -0.1
884,397 - BWI76_RS04295 0.27 +1.4
884,397 - BWI76_RS04295 0.27 -0.4
884,397 - BWI76_RS04295 0.27 -2.7
884,419 - BWI76_RS04295 0.32 -0.3
884,423 + BWI76_RS04295 0.33 -0.6

Or see this region's nucleotide sequence