Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26015 and BWI76_RS26020 are separated by 108 nucleotides BWI76_RS26020 and BWI76_RS26025 are separated by 277 nucleotides BWI76_RS26025 and BWI76_RS26030 overlap by 4 nucleotides
BWI76_RS26015: BWI76_RS26015 - DUF2559 domain-containing protein, at 5,376,344 to 5,376,511
_RS26015
BWI76_RS26020: BWI76_RS26020 - peptidylprolyl isomerase A, at 5,376,620 to 5,377,189
_RS26020
BWI76_RS26025: BWI76_RS26025 - MFS transporter TsgA, at 5,377,467 to 5,378,651
_RS26025
BWI76_RS26030: BWI76_RS26030 - cytosine deaminase, at 5,378,648 to 5,379,970
_RS26030
Position (kb) 5377
5378
5379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5376.602 kb on - strand at 5376.626 kb on - strand at 5376.662 kb on - strand at 5376.679 kb on + strand, within BWI76_RS26020 at 5376.730 kb on - strand, within BWI76_RS26020 at 5376.751 kb on - strand, within BWI76_RS26020 at 5376.825 kb on - strand, within BWI76_RS26020 at 5376.830 kb on + strand, within BWI76_RS26020 at 5376.830 kb on + strand, within BWI76_RS26020 at 5376.830 kb on + strand, within BWI76_RS26020 at 5377.089 kb on - strand, within BWI76_RS26020 at 5377.233 kb on - strand at 5377.282 kb on + strand at 5377.291 kb on - strand at 5377.437 kb on - strand at 5377.448 kb on - strand at 5377.464 kb on + strand at 5377.632 kb on + strand, within BWI76_RS26025 at 5377.655 kb on + strand, within BWI76_RS26025 at 5377.724 kb on - strand, within BWI76_RS26025 at 5377.788 kb on - strand, within BWI76_RS26025 at 5377.790 kb on + strand, within BWI76_RS26025 at 5378.114 kb on + strand, within BWI76_RS26025 at 5378.116 kb on + strand, within BWI76_RS26025 at 5378.116 kb on + strand, within BWI76_RS26025 at 5378.124 kb on - strand, within BWI76_RS26025 at 5378.313 kb on + strand, within BWI76_RS26025 at 5378.367 kb on - strand, within BWI76_RS26025 at 5378.624 kb on + strand at 5378.661 kb on - strand at 5378.799 kb on - strand, within BWI76_RS26030 at 5378.889 kb on - strand, within BWI76_RS26030 at 5379.014 kb on - strand, within BWI76_RS26030 at 5379.024 kb on - strand at 5379.094 kb on - strand, within BWI76_RS26030 at 5379.217 kb on + strand at 5379.449 kb on - strand, within BWI76_RS26030 at 5379.526 kb on - strand, within BWI76_RS26030 at 5379.580 kb on + strand, within BWI76_RS26030
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 5,376,602 - +0.3 5,376,626 - -0.1 5,376,662 - -3.1 5,376,679 + BWI76_RS26020 0.10 -1.8 5,376,730 - BWI76_RS26020 0.19 +0.5 5,376,751 - BWI76_RS26020 0.23 +1.1 5,376,825 - BWI76_RS26020 0.36 -1.2 5,376,830 + BWI76_RS26020 0.37 -0.9 5,376,830 + BWI76_RS26020 0.37 -2.8 5,376,830 + BWI76_RS26020 0.37 +0.3 5,377,089 - BWI76_RS26020 0.82 +0.7 5,377,233 - -2.4 5,377,282 + -0.8 5,377,291 - +0.6 5,377,437 - -2.3 5,377,448 - +0.4 5,377,464 + +0.6 5,377,632 + BWI76_RS26025 0.14 +1.1 5,377,655 + BWI76_RS26025 0.16 +0.9 5,377,724 - BWI76_RS26025 0.22 +1.9 5,377,788 - BWI76_RS26025 0.27 +1.4 5,377,790 + BWI76_RS26025 0.27 -0.6 5,378,114 + BWI76_RS26025 0.55 +1.2 5,378,116 + BWI76_RS26025 0.55 +1.0 5,378,116 + BWI76_RS26025 0.55 -1.6 5,378,124 - BWI76_RS26025 0.55 +2.6 5,378,313 + BWI76_RS26025 0.71 +1.2 5,378,367 - BWI76_RS26025 0.76 +0.4 5,378,624 + +0.7 5,378,661 - +0.7 5,378,799 - BWI76_RS26030 0.11 -1.2 5,378,889 - BWI76_RS26030 0.18 -0.3 5,379,014 - BWI76_RS26030 0.28 -2.4 5,379,024 - +1.7 5,379,094 - BWI76_RS26030 0.34 -2.6 5,379,217 + +0.7 5,379,449 - BWI76_RS26030 0.61 +0.1 5,379,526 - BWI76_RS26030 0.66 -1.3 5,379,580 + BWI76_RS26030 0.70 +0.7
Or see this region's nucleotide sequence