Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21280 and BWI76_RS21285 are separated by 19 nucleotides BWI76_RS21285 and BWI76_RS21290 are separated by 209 nucleotides BWI76_RS21290 and BWI76_RS21295 are separated by 166 nucleotides BWI76_RS21295 and BWI76_RS21300 are separated by 36 nucleotides BWI76_RS21300 and BWI76_RS21305 overlap by 1 nucleotides
BWI76_RS21280: BWI76_RS21280 - tRNA adenosine(34) deaminase TadA, at 4,458,604 to 4,459,149
_RS21280
BWI76_RS21285: BWI76_RS21285 - HAD family hydrolase, at 4,459,169 to 4,459,804
_RS21285
BWI76_RS21290: BWI76_RS21290 - DNA-binding transcriptional regulator, at 4,460,014 to 4,460,862
_RS21290
BWI76_RS21295: BWI76_RS21295 - ferredoxin, at 4,461,029 to 4,461,289
_RS21295
BWI76_RS21300: BWI76_RS21300 - holo-ACP synthase, at 4,461,326 to 4,461,706
_RS21300
BWI76_RS21305: BWI76_RS21305 - pyridoxine 5'-phosphate synthase, at 4,461,706 to 4,462,437
_RS21305
Position (kb)
4460
4461 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4459.171 kb on + strand at 4459.398 kb on + strand, within BWI76_RS21285 at 4459.745 kb on - strand at 4459.988 kb on + strand at 4459.996 kb on - strand at 4460.011 kb on + strand at 4460.045 kb on + strand at 4460.053 kb on - strand at 4460.053 kb on - strand at 4460.256 kb on + strand, within BWI76_RS21290 at 4460.256 kb on + strand, within BWI76_RS21290 at 4460.333 kb on - strand, within BWI76_RS21290 at 4460.531 kb on + strand, within BWI76_RS21290 at 4460.579 kb on - strand, within BWI76_RS21290 at 4460.748 kb on - strand at 4460.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 4,459,171 + -1.9 4,459,398 + BWI76_RS21285 0.36 +0.4 4,459,745 - -0.1 4,459,988 + +0.4 4,459,996 - +1.3 4,460,011 + -1.1 4,460,045 + +0.6 4,460,053 - +0.9 4,460,053 - -0.2 4,460,256 + BWI76_RS21290 0.29 -0.9 4,460,256 + BWI76_RS21290 0.29 +1.6 4,460,333 - BWI76_RS21290 0.38 +4.7 4,460,531 + BWI76_RS21290 0.61 +1.7 4,460,579 - BWI76_RS21290 0.67 +0.2 4,460,748 - +2.6 4,460,907 - -0.8
Or see this region's nucleotide sequence