Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18765

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18750 and BWI76_RS18755 are separated by 39 nucleotidesBWI76_RS18755 and BWI76_RS18760 are separated by 193 nucleotidesBWI76_RS18760 and BWI76_RS18765 are separated by 168 nucleotidesBWI76_RS18765 and BWI76_RS18770 are separated by 102 nucleotidesBWI76_RS18770 and BWI76_RS18775 are separated by 127 nucleotides BWI76_RS18750: BWI76_RS18750 - adenosylcobinamide-GDP ribazoletransferase, at 3,886,872 to 3,887,612 _RS18750 BWI76_RS18755: BWI76_RS18755 - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 3,887,652 to 3,887,885 _RS18755 BWI76_RS18760: BWI76_RS18760 - hypothetical protein, at 3,888,079 to 3,888,414 _RS18760 BWI76_RS18765: BWI76_RS18765 - FUSC family protein, at 3,888,583 to 3,889,641 _RS18765 BWI76_RS18770: BWI76_RS18770 - DNA gyrase inhibitor, at 3,889,744 to 3,890,217 _RS18770 BWI76_RS18775: BWI76_RS18775 - hypothetical protein, at 3,890,345 to 3,891,781 _RS18775 Position (kb) 3888 3889 3890Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3887.695 kb on + strand, within BWI76_RS18755at 3888.459 kb on + strandat 3888.776 kb on + strand, within BWI76_RS18765at 3888.848 kb on - strand, within BWI76_RS18765at 3888.914 kb on + strand, within BWI76_RS18765at 3889.086 kb on + strand, within BWI76_RS18765at 3889.189 kb on + strand, within BWI76_RS18765at 3889.350 kb on - strand, within BWI76_RS18765at 3889.536 kb on + strandat 3889.544 kb on - strandat 3890.075 kb on + strand, within BWI76_RS18770at 3890.198 kb on + strandat 3890.278 kb on + strandat 3890.378 kb on + strandat 3890.544 kb on + strand, within BWI76_RS18775

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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3,887,695 + BWI76_RS18755 0.18 -0.7
3,888,459 + -0.8
3,888,776 + BWI76_RS18765 0.18 -0.8
3,888,848 - BWI76_RS18765 0.25 +0.4
3,888,914 + BWI76_RS18765 0.31 -2.1
3,889,086 + BWI76_RS18765 0.47 -1.9
3,889,189 + BWI76_RS18765 0.57 -0.0
3,889,350 - BWI76_RS18765 0.72 -0.4
3,889,536 + -0.3
3,889,544 - +0.4
3,890,075 + BWI76_RS18770 0.70 +1.1
3,890,198 + +0.5
3,890,278 + -0.4
3,890,378 + +1.1
3,890,544 + BWI76_RS18775 0.14 -3.8

Or see this region's nucleotide sequence