Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17385 and BWI76_RS17390 are separated by 68 nucleotides BWI76_RS17390 and BWI76_RS17395 are separated by 238 nucleotides BWI76_RS17395 and BWI76_RS17400 are separated by 35 nucleotides BWI76_RS17400 and BWI76_RS17405 are separated by 150 nucleotides BWI76_RS17405 and BWI76_RS17410 are separated by 265 nucleotides
BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126
_RS17385
BWI76_RS17390: BWI76_RS17390 - DsrE family protein, at 3,609,195 to 3,609,548
_RS17390
BWI76_RS17395: BWI76_RS17395 - hypothetical protein, at 3,609,787 to 3,610,029
_RS17395
BWI76_RS17400: BWI76_RS17400 - transporter, at 3,610,065 to 3,610,745
_RS17400
BWI76_RS17405: BWI76_RS17405 - cation transport regulator, at 3,610,896 to 3,611,126
_RS17405
BWI76_RS17410: BWI76_RS17410 - sodium-potassium/proton antiporter ChaA, at 3,611,392 to 3,612,492
_RS17410
Position (kb) 3610
3611 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3609.104 kb on - strand at 3609.104 kb on - strand at 3609.274 kb on + strand, within BWI76_RS17390 at 3609.366 kb on + strand, within BWI76_RS17390 at 3609.702 kb on + strand at 3609.702 kb on + strand at 3609.710 kb on - strand at 3610.493 kb on - strand, within BWI76_RS17400 at 3611.016 kb on - strand, within BWI76_RS17405 at 3611.016 kb on - strand, within BWI76_RS17405 at 3611.082 kb on + strand at 3611.092 kb on + strand, within BWI76_RS17405 at 3611.427 kb on + strand at 3611.437 kb on + strand at 3611.539 kb on + strand, within BWI76_RS17410 at 3611.573 kb on + strand, within BWI76_RS17410
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 3,609,104 - -0.9 3,609,104 - +0.2 3,609,274 + BWI76_RS17390 0.22 +1.5 3,609,366 + BWI76_RS17390 0.48 +1.4 3,609,702 + +0.4 3,609,702 + +0.1 3,609,710 - -0.0 3,610,493 - BWI76_RS17400 0.63 -1.1 3,611,016 - BWI76_RS17405 0.52 +0.1 3,611,016 - BWI76_RS17405 0.52 -0.3 3,611,082 + +3.0 3,611,092 + BWI76_RS17405 0.85 +0.9 3,611,427 + -0.6 3,611,437 + -0.2 3,611,539 + BWI76_RS17410 0.13 +3.2 3,611,573 + BWI76_RS17410 0.16 -2.0
Or see this region's nucleotide sequence