Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13280 and BWI76_RS13285 are separated by 172 nucleotides BWI76_RS13285 and BWI76_RS13290 overlap by 4 nucleotides BWI76_RS13290 and BWI76_RS13295 are separated by 239 nucleotides
BWI76_RS13280: BWI76_RS13280 - LysR family transcriptional regulator, at 2,768,905 to 2,769,828
_RS13280
BWI76_RS13285: BWI76_RS13285 - protocatechuate 3,4-dioxygenase subunit alpha, at 2,770,001 to 2,770,621
_RS13285
BWI76_RS13290: BWI76_RS13290 - protocatechuate 3,4-dioxygenase subunit beta, at 2,770,618 to 2,771,358
_RS13290
BWI76_RS13295: BWI76_RS13295 - DUF1338 domain-containing protein, at 2,771,598 to 2,772,941
_RS13295
Position (kb)
2770
2771 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2769.007 kb on - strand, within BWI76_RS13280 at 2769.080 kb on - strand, within BWI76_RS13280 at 2769.505 kb on - strand, within BWI76_RS13280 at 2769.507 kb on - strand, within BWI76_RS13280 at 2769.574 kb on - strand, within BWI76_RS13280 at 2769.577 kb on - strand, within BWI76_RS13280 at 2769.700 kb on + strand, within BWI76_RS13280 at 2769.728 kb on - strand, within BWI76_RS13280 at 2769.757 kb on - strand at 2769.783 kb on - strand at 2769.794 kb on + strand at 2770.020 kb on + strand at 2770.256 kb on + strand, within BWI76_RS13285 at 2770.653 kb on + strand at 2770.661 kb on - strand at 2770.888 kb on + strand, within BWI76_RS13290 at 2770.919 kb on - strand, within BWI76_RS13290 at 2771.203 kb on - strand, within BWI76_RS13290 at 2771.475 kb on + strand at 2771.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 2,769,007 - BWI76_RS13280 0.11 -0.5 2,769,080 - BWI76_RS13280 0.19 -1.0 2,769,505 - BWI76_RS13280 0.65 -1.0 2,769,507 - BWI76_RS13280 0.65 +0.4 2,769,574 - BWI76_RS13280 0.72 +0.3 2,769,577 - BWI76_RS13280 0.73 -0.2 2,769,700 + BWI76_RS13280 0.86 +0.2 2,769,728 - BWI76_RS13280 0.89 -2.2 2,769,757 - +2.6 2,769,783 - +0.8 2,769,794 + -3.2 2,770,020 + -0.8 2,770,256 + BWI76_RS13285 0.41 -3.1 2,770,653 + -0.4 2,770,661 - -0.4 2,770,888 + BWI76_RS13290 0.36 -1.6 2,770,919 - BWI76_RS13290 0.41 -1.8 2,771,203 - BWI76_RS13290 0.79 +0.2 2,771,475 + -0.0 2,771,602 - -0.8
Or see this region's nucleotide sequence